PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030605.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 306aa    MW: 33498 Da    PI: 7.0998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030605.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20151200255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  HL.SW.v1.0.G030605.1 151 NYRGVRQRP-WGKWAAEIRDPR----KaTRVWLGTFNTAEDAARAYDKAAIEFRG 200
                           59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.62E-36150208No hitNo description
PfamPF008474.7E-14151200IPR001471AP2/ERF domain
PROSITE profilePS5103225.185151208IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-23151209IPR016177DNA-binding domain
SMARTSM003808.8E-40151214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-33151208IPR001471AP2/ERF domain
PRINTSPR003675.5E-12152163IPR001471AP2/ERF domain
PRINTSPR003675.5E-12174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MHKSSKRPKL SDSPPPPMPY DLSPLSRRLT HEQELSIIVS ALRNVVSGTA SNAPVDFSSE  60
FLQFPSELSV GGANFFSSSP STSTDNGDGN LLRASDLDTC QVCKIQGCLG CNFFPPSQDE  120
SNKTHNGNNK AINKNGGNNN KATPKKRVKK NYRGVRQRPW GKWAAEIRDP RKATRVWLGT  180
FNTAEDAARA YDKAAIEFRG PRAKLNFPFP DTSLVQNVSN LPEPVQNTTT TTSATTSSIF  240
QQNNVYENQQ SGFHEMSTDM GIGSTENDQL FSFGDDELQQ WMTTMMDCTG DHSSDSGNGS  300
GLLHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-25150209161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236506.16e-89PREDICTED: ethylene-responsive transcription factor ERF109
TrEMBLA0A2P5D7131e-113A0A2P5D713_PARAD; AP2/ERF transcription factor
STRINGXP_008236506.12e-88(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-39redox responsive transcription factor 1