PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030012.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 151aa    MW: 17608.3 Da    PI: 9.6419
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030012.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.66.2e-32959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gkl eys+
  HL.SW.v1.0.G030012.1  9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSHKGKLSEYST 59
                          79***********************************************96 PP
2K-box631.1e-21931481469
                 K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                           + +++ e+++L ++ie Lqr+ Rh+lGedL+sL+lk+L  Leqq++ slk+iR+++
  HL.SW.v1.0.G030012.1  93 QGNWTVEYSRLTAKIELLQRNRRHYLGEDLDSLTLKDLTGLEQQIDISLKQIRARR 148
                           5699**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.057161IPR002100Transcription factor, MADS-box
CDDcd002651.98E-41279No hitNo description
SuperFamilySSF554553.79E-35288IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014863.6E-1892148IPR002487Transcription factor, K-box
PROSITE profilePS5129711.12293150IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVIVFSH KGKLSEYSTD  60
SCMEKILERY ERYSYAERQL VSMDSETQLQ IMQGNWTVEY SRLTAKIELL QRNRRHYLGE  120
DLDSLTLKDL TGLEQQIDIS LKQIRARRVC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-20174173MEF2 CHIMERA
6byy_B4e-20174173MEF2 CHIMERA
6byy_C4e-20174173MEF2 CHIMERA
6byy_D4e-20174173MEF2 CHIMERA
6bz1_A4e-20174173MEF2 CHIMERA
6bz1_B4e-20174173MEF2 CHIMERA
6bz1_C4e-20174173MEF2 CHIMERA
6bz1_D4e-20174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5061531e-121KJ506153.1 Ficus carica MADS-box protein (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018303.13e-90truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ6E6S72e-79AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2P5E2G47e-89A0A2P5E2G4_PARAD; MADS-box transcription factor
STRINGXP_010091613.12e-85(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.17e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]