PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G029910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GRAS | ||||||||
Protein Properties | Length: 237aa MW: 26387.2 Da PI: 7.1805 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 277.1 | 5.4e-85 | 1 | 235 | 129 | 374 |
GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 +qaL++R++g+p lRiTgvgs s ++++etg+ L+++A++l+vpfef++ v ++ledl++++++ + gEalaVn+v +lhr++ HL.SW.v1.0.G029910.1 1 MQALSARSGGSPFLRITGVGS----SLDSVRETGRCLTELAHSLQVPFEFHA-VGEQLEDLKPHMFQRRVGEALAVNSVNRLHRVP--- 81 9********************....9**************************.7*******************************9... PP GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306 ++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE+ ++++ei+n+va eg er+ HL.SW.v1.0.G029910.1 82 GNFL---GNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQYIFAPEIRNIVAFEGPERI 167 4443...47******************************************************************************** PP GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 erhe+l kWr+ +e GFk vpls +a++q k ll ++ +gyr+ e++g+l+lgW+drpL+++SaWr HL.SW.v1.0.G029910.1 168 ERHERLDKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCEGYRLTEDNGCLLLGWMDRPLIAASAWR 235 *******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.8E-82 | 1 | 235 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 40.265 | 1 | 215 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MQALSARSGG SPFLRITGVG SSLDSVRETG RCLTELAHSL QVPFEFHAVG EQLEDLKPHM 60 FQRRVGEALA VNSVNRLHRV PGNFLGNLLA MIRDQAPNIV TLVEQEASHN GPYFLGRFLE 120 ALHYYSAIFD SLDATFPAES AQRAKVEQYI FAPEIRNIVA FEGPERIERH ERLDKWRKLM 180 EGKGFKGVPL SANAVTQSKI LLGLYSCEGY RLTEDNGCLL LGWMDRPLIA ASAWRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-60 | 4 | 234 | 150 | 378 | Protein SCARECROW |
5b3h_A | 2e-60 | 4 | 234 | 149 | 377 | Protein SCARECROW |
5b3h_D | 2e-60 | 4 | 234 | 149 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024933321.1 | 1e-154 | DELLA protein RGL1-like | ||||
Swissprot | G7L166 | 1e-154 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A2P5CJP5 | 1e-160 | A0A2P5CJP5_PARAD; GRAS transcription factor | ||||
STRING | AES78313 | 1e-152 | (Medicago truncatula) | ||||
STRING | AES78316 | 1e-152 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9470 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 1e-64 | RGA-like 1 |
Publications ? help Back to Top | |||
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