PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029274.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 545aa    MW: 60158.7 Da    PI: 4.8044
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029274.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.4e-351462382103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k++++++d++l+ +isw ++g sfvv+d+ +f++ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F++gk
  HL.SW.v1.0.G029274.1 146 FLSKTFDLVDDPALDPIISWGSTGGSFVVWDPVDFSRLILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFQRGK 225
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r+ks+
  HL.SW.v1.0.G029274.1 226 KHLLKSIQRRKSH 238
                           **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-54142235IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.45E-33143235IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-35144235IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-17146169IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-30146235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-17184196IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340185209IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-17197209IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MNPSDEGFSP HSPSKSSAEL ESGAFGVSPI RPKMSETLGT QPFLSESFFM DTSASFSMES  60
IGFSGSHSSP SFVFSPMPIE LIANPILSSF SPVFEFKAEI PVGERAQTVP SSIEGEAGAP  120
VTVTGTEFVA VPRPLECLQG NLIPPFLSKT FDLVDDPALD PIISWGSTGG SFVVWDPVDF  180
SRLILPRNFK HNNFSSFVRQ LNTYGFRKID TDKWEFANEA FQRGKKHLLK SIQRRKSHQS  240
QPIASYIGPS SEAGKSGLEG EIEKLRNEKS ALMQEVVELQ QQQRGTVRFM EAVNKRIQSA  300
EQKQKQMVSF FSKMLQNPSF ISRLKQKEQQ KGIGPSRMQR KFMTQKQHEI GEPDSSMEGK  360
LVKCSPGWRN LGIPFEGPDL NPFPIEQAMQ GFSEIPFQVG EGAASSMQTE DPFFKGKGIL  420
NLKQELNPDY YVSFPEDLTK EKSFPELSST GMENIIKQED IWSMGLDTSA GMSSGGSDLL  480
ATPVSYEVPE LGMSSGSLDI WDLSSLEVGG SEFHKWSSAD ETPYIDPQNQ SSQAKDNIPK  540
NMDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-2214323517120Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898712.10.0heat stress transcription factor A-3
RefseqXP_024922346.10.0heat stress transcription factor A-3
TrEMBLA0A2P5BVZ00.0A0A2P5BVZ0_TREOI; Heat shock transcription factor
STRINGXP_009365327.11e-179(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.15e-94heat shock transcription factor A3