PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | AP2 | ||||||||
Protein Properties | Length: 493aa MW: 54157.6 Da PI: 6.6958 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.2 | 7.6e-17 | 147 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g HL.SW.v1.0.G028482.1 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 196 78*******************......55***********************9997 PP | |||||||
2 | AP2 | 41.5 | 3.4e-13 | 239 | 289 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + + k+++lg f+++ eAa+a+++a+ k +g HL.SW.v1.0.G028482.1 239 SKYRGVTLHK-CGRWEARMGQF----MGkKYIYLGLFDSEVEAARAYDKAAIKCNG 289 89********.7******5554....224**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-16 | 147 | 206 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-8 | 147 | 196 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-17 | 148 | 204 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.06E-11 | 148 | 206 | No hit | No description |
SMART | SM00380 | 2.6E-31 | 148 | 210 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.543 | 148 | 204 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.74E-26 | 239 | 299 | No hit | No description |
Pfam | PF00847 | 8.1E-9 | 239 | 289 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-17 | 239 | 298 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-15 | 240 | 297 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.435 | 240 | 297 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-33 | 240 | 303 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 241 | 252 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 279 | 299 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MLDLNLNVVL SSDSAASDSV DNKLLESSGS FNSSSNLTTA DDDSSSNLDA TASLFGYSFE 60 ILNNHRNDDA DVSTTNEDDD HRSCFARSIE LFPVASNNTK SSGSRRQWLG LSCSEGTYGG 120 PAEQGIAPQQ QNKQVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA 180 HAAARAYDRA AVKFRGLEAD INFNISDYDE DIKHMSSFSK EEFVHILRRQ STGFSRGSSK 240 YRGVTLHKCG RWEARMGQFM GKKYIYLGLF DSEVEAARAY DKAAIKCNGR EAVTNFDPSS 300 YDGEIMMSEA DYEGSNQNLD LNLGIAPLSI SNAEASDVYF KQGYSDIPVF TRDKNENFAS 360 VGATLPHHGS RMISEHHHSS IMSGINSNFF PNHMERAIEK GVDVNSLVPN WAWQIQGPNG 420 RAAVLPPPVP LFSTAASSGF PSSTTSASPS SLAAATTQPH FPNNASNILH HHFIPPSSIT 480 TTNNLPHFYC RT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008239108.1 | 1e-171 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | Q8H443 | 1e-104 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A2P5A7F5 | 0.0 | A0A2P5A7F5_PARAD; AP2/ERF transcription factor | ||||
STRING | XP_008239108.1 | 1e-171 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10581 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 7e-95 | related to AP2.7 |
Publications ? help Back to Top | |||
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