PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028128.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 351aa    MW: 38712.5 Da    PI: 7.7634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028128.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003232254123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F++   L  H+r+H
  HL.SW.v1.0.G028128.1 232 HECSICGAEFTSGQALGGHMRRH 254
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-5131162No hitNo description
PfamPF139123.2E-11134159IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.596135162IPR007087Zinc finger, C2H2
SMARTSM003550.42135157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-5230256No hitNo description
Gene3DG3DSA:3.30.160.608.9E-4230255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12231255IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723232254IPR007087Zinc finger, C2H2
SMARTSM003550.01232254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEAQEELVVL KKDHHDGDHD EMMMMRQNMM MMIKGKRTKR PRAPTPVLIS PPNFTHMASS  60
SSSTGGGSGG AGGGFFLASP TTSSTEITET VKTSEEEEDM ANCLILLAQG GLHGRRTSPE  120
NDFPAAETAA GSSVYQCKTC NRNFQSFQAL GGHRASHKKP KTTANIAEQE KKTLSFQVVM  180
DDQDHHHYHH HHEQLIVNGN STTSTALSLQ ISNNNNHNSG MNTNTTKVPK VHECSICGAE  240
FTSGQALGGH MRRHRTTPFN NAQTTTTTTM TTPFTSSTDD ELLKNNNNNN KMMMMMMMKK  300
KKKPRHVLEL DLNLPAPDED HRRETKFPFN AAAKEQVIAF SASPLVDCHY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BJP06e-90A0A2P5BJP0_PARAD; TFIIH C1-like domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.19e-42C2H2 family protein