PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027925.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 342aa    MW: 38387.2 Da    PI: 4.6746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027925.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1871127355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpse..ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr++  +g+WvAeIr+p +   +   k  r +lg+f ta +Aa+a+++a+k+++g
  HL.SW.v1.0.G027925.1  71 FRGVRQRT-WGKWVAEIREPHNgsTKsnqKGSRLWLGTFSTATDAARAYDEAAKAMYG 127
                           79***999.**********755452255455************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-3570141IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1970136IPR016177DNA-binding domain
PROSITE profilePS5103222.06270135IPR001471AP2/ERF domain
PfamPF008471.7E-1271127IPR001471AP2/ERF domain
CDDcd000186.33E-2971137No hitNo description
Gene3DG3DSA:3.30.730.104.7E-2971137IPR001471AP2/ERF domain
PRINTSPR003671.4E-97182IPR001471AP2/ERF domain
PRINTSPR003671.4E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MASEVSNKSK KPRKRRNGSE SVVDTLAKWK NYNDQLSSLE NGKGNLKSPA KGSKKGCMRG  60
KGGPENLDFY FRGVRQRTWG KWVAEIREPH NGSTKSNQKG SRLWLGTFST ATDAARAYDE  120
AAKAMYGPVA LLNFPESPAV DSTEELSNAF PSSKLEETEQ DEELNLDMKH NYGFAEADFV  180
KRSLEKQDCF RDTKLNRGDY LSEAAQNSEP GTMTLNDDME MDVKDIMISN GSSDNYACLQ  240
TEHSSNTGYY SVRDFEPAND VSMVEKFDNF CGSAGSSRRD NYLQNWATTE TLARDPDLSK  300
SLDQMEETQL IPGYDFDFLT PGYDFGLAEE QEKLHLWFPN Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1770135260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-16711361573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018451.12e-91dehydration-responsive element-binding protein 2C isoform X1
TrEMBLA0A2P5F9A41e-131A0A2P5F9A4_TREOI; AP2/ERF domain containing protein
STRINGXP_010091874.11e-72(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-29ERF family protein