PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G027829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 88aa MW: 10121.4 Da PI: 11.0262 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.5 | 3e-15 | 38 | 87 | 1 | 50 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqN 50 r+++ ++++eq++ L + Fe+++++ e++ +LA++lg++ rqV vWFqN HL.SW.v1.0.G027829.1 38 RKRKMRLSEEQVNFLARNFESEQKLAPERKDRLASELGIDPRQVAVWFQN 87 788999*******************************************9 PP | |||||||
2 | HD-ZIP_I/II | 66.5 | 6.1e-22 | 39 | 87 | 1 | 49 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqn 49 ++k rls+eqv++L ++Fe+e+kL perK +la+eLg++prqvavWFqn HL.SW.v1.0.G027829.1 39 KRKMRLSEEQVNFLARNFESEQKLAPERKDRLASELGIDPRQVAVWFQN 87 589*********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-14 | 25 | 87 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.13E-13 | 34 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.576 | 35 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-4 | 37 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.0E-12 | 38 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.30E-8 | 38 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSNAEMSNAG TSNAQRETKE TRRRKKNKSA KEESVPARKR KMRLSEEQVN FLARNFESEQ 60 KLAPERKDRL ASELGIDPRQ VAVWFQN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 39 | RRRKKNKSAKEESVPARKR |
2 | 23 | 40 | RKKNKSAKEESVPARKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006383237.1 | 1e-19 | homeobox-leucine zipper protein ATHB-40 | ||||
Refseq | XP_009605338.1 | 2e-19 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | O23208 | 3e-17 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | B9MXR7 | 3e-18 | B9MXR7_POPTR; Uncharacterized protein | ||||
TrEMBL | S8C296 | 8e-19 | S8C296_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0005s12760.1 | 5e-19 | (Populus trichocarpa) | ||||
STRING | XP_009605338.1 | 7e-19 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 2e-18 | homeobox protein 21 |
Publications ? help Back to Top | |||
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