PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G027790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB_related | ||||||||
Protein Properties | Length: 242aa MW: 26183.3 Da PI: 4.5124 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.6 | 2.8e-08 | 200 | 228 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r++W++ Ed+ l+ av++ G g+W+ I r HL.SW.v1.0.G027790.1 200 RKPWSEAEDLELIAAVQKCGEGNWANILR 228 799***********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.927 | 195 | 242 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 197 | 240 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.8E-9 | 197 | 241 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 200 | 228 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.81E-11 | 201 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVESSKKQTK GLISEEEIST LLHRYSATTV LTLLHEVSNC SDLKIDWNAL VEKTSTGISN 60 ANEYQMLWRH LAYRQSLLET FENGAGAQPM DDDSDLEYEL EAFPTLSGEP LAEAAACVKV 120 LIASGSSSDS IPCGSTVEAP LTINIPNGQS SRALEQSSCS MQGTNITVPV LVQKQPVPSA 180 TIADQDMTGL AGGNLHRRKR KPWSEAEDLE LIAAVQKCGE GNWANILRGD FKGDRTASQL 240 SQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010086659.1 | 1e-124 | uncharacterized protein LOC21386454 isoform X2 | ||||
TrEMBL | A0A2P5F1D7 | 1e-134 | A0A2P5F1D7_TREOI; GAMYB transcription factor | ||||
STRING | XP_010086659.1 | 1e-123 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 5e-70 | MYB_related family protein |