PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027364.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 391aa    MW: 44269.5 Da    PI: 5.1645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027364.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +grWT+eEde l ++++ +G g+W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G027364.1 14 KGRWTAEEDEVLTKYIQTHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                          79******************************99************97 PP
2Myb_DNA-binding53.94.3e-1767112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+ T eE+e ++++++ lG++ W+ Ia++++ gRt++++k++w+++l
  HL.SW.v1.0.G027364.1  67 RGNITSEEEETIAKLHNALGNR-WSVIAEHLP-GRTDNEIKNYWNSHL 112
                           7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.417961IPR017930Myb domain
SuperFamilySSF466896.6E-2911108IPR009057Homeodomain-like
SMARTSM007172.0E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
CDDcd001671.53E-81661No hitNo description
PROSITE profilePS5129423.21162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2565116IPR009057Homeodomain-like
SMARTSM007175.7E-1666114IPR001005SANT/Myb domain
PfamPF002493.2E-1567112IPR001005SANT/Myb domain
CDDcd001671.76E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGRAPCCEKL GLKKGRWTAE EDEVLTKYIQ THGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TSEEEETIAK LHNALGNRWS VIAEHLPGRT DNEIKNYWNS HLSRKLYSLS  120
KRLGNDSSSS QTIIIHDMEK VLASFNKRRG GRGRTSRSSL KKNKNNNTNQ TTADHDGDDK  180
VVLLVPSNTT TSSSSTIATT TTVEEVKDSK SFDQAEEENK EKHVVLPTAE ELLGPNEGLD  240
REVNRFSYGV EDGVLDRPPS GKKNLNTVDL QLEEKEKDEK TTCVLNSTEA RESSSTVEHS  300
EEWHTCISSA MHSDYINNSS GFDDEGIWLD WKWEEYIESH NNSNNNLSYY YYDCNNDSNG  360
IWDEYSSDQE GERMFSLWES GNGLNDTTCK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-24121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-23121254159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-23121254159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
1mse_C5e-24121162105C-Myb DNA-Binding Domain
1msf_C5e-24121162105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019979.11e-114transcription factor MYB111
TrEMBLA0A2P5CLT41e-139A0A2P5CLT4_PARAD; MYB transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-66myb domain protein 111