PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026901.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family FAR1
Protein Properties Length: 854aa    MW: 96691.8 Da    PI: 6.4792
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026901.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.31.9e-1663137290
                  FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           fY++Y++++GFs+ + + ++sk +g i++ +f Cs+e +++++ ++              C+a+l+++++++++w+vtk+ ++HnH++a
  HL.SW.v1.0.G026901.1  63 FYDAYGRRAGFSIHVGQFNRSKPDGPIVTWEFACSREVFKRKNVES--------------CNAMLRLERKDQNHWVVTKFIEDHNHSMA 137
                           9***************************************999877..............**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1363137IPR004330FAR1 DNA binding domain
PfamPF105513.2E-29269361IPR018289MULE transposase domain
PfamPF044345.4E-11546580IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.004546582IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-7557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MDAEAERENR EHHAGESTEL NKGEKLNVNE CLTGRELNIH DDDGNAKPHV GMEFDSEDAA  60
KTFYDAYGRR AGFSIHVGQF NRSKPDGPIV TWEFACSREV FKRKNVESCN AMLRLERKDQ  120
NHWVVTKFIE DHNHSMASPG KVHYLRPRRH FAGATKNVAD TLDSPSDIYV SVDGNNVSYE  180
SNRVVRSVSP VEINHPSRNA GPINYIRPSS RKRTLGRDAQ NLLNYFKKMQ AENPGFFYAI  240
QLDDDNRMTN VFWADARSRA AYNYFGDSVI FDTMYRPNQY QVPFAPFTGV NNHGQMILFG  300
CALLLDESES SFTWLFKTWL SAMNDRPPVS ITTDQDRAIQ IAVSQVFSET RHCICKWHIL  360
REGQERLAHI YLAHPSFYGE LYSCINFSET IDDFESSWAS LLDKYELQRN EWLQAVYNAR  420
KQWAPVYFRG TFFAALSSSQ GVSSFFDGYV NQQTTIPLFF KQYEIALEHS LEKEIEADYD  480
TICTTPVLKT PSPMEQQAAN LYTKKVFAKF QEELVETFVY TANKIEGDGV VSKFRVAKYE  540
HDDKAYIVSL NISEMKANCS CLMFEYSGIL CRHILTVFTV TNVLTLPSHY ILKRWTRNAK  600
AALGQDESIE DMQGIESLTL RFNNLCREAI KYAQEGAVAA ETYIAAMSAL REGSKKVSAV  660
KKNVAEITTA SQGSGNIQED GNRKGHLPAS DMVSSLWPWQ EAMPHRFNLN DAGIPISDFS  720
SMGAVSIHRD GGTSDNTVVL TCFKSMTWVI ENNNSTQGSK VALINLKLQD YGQTPSGETE  780
VQFRLTRVTL EPMLRSMAYI SQQLSTPANR VAVINLKLQD TKTTSGETEV KFQVSRDTLG  840
SMLRSMAYIR EQL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026251.10.0protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLM5X6W30.0M5X6W3_PRUPE; Uncharacterized protein
STRINGXP_008231884.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]