PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026399.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 317aa    MW: 35166.9 Da    PI: 8.7159
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026399.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.2e-07167184825
                           GGGGTS--TTTTT-SS-S CS
               zf-CCCH   8 ffartGtCkyGdrCkFaH 25 
                           +++r+G+Ck+G  Ck++H
  HL.SW.v1.0.G026399.1 167 YYLRSGECKFGKACKYNH 184
                           9***************** PP
2zf-CCCH23.11.3e-07280306127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C ff++t  Ck+ ++Ck++H++
  HL.SW.v1.0.G026399.1 280 PGQPECTFFLKTRDCKFKSNCKYHHPK 306
                           5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689069.16E-868100No hitNo description
SuperFamilySSF520478.24E-787171No hitNo description
Gene3DG3DSA:3.80.10.104.8E-9100165IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003677.2E-4116141IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003673.5143168IPR006553Leucine-rich repeat, cysteine-containing subtype
SMARTSM003564.5164186IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.122167187IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5167184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.037279307IPR000571Zinc finger, CCCH-type
SMARTSM003560.26279306IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5281306IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MRACGLGRVI GRLDSWVYGM ARSWVRRCLR RWVYGVGAAV LELTISEPPV PDLGNNAMMD  60
DWVKQFEELA GSQEKLAYFR IKELKDVLTH LGLSKQGKKQ GCYVGDHGLA AVGQSCKQLG  120
DLNLRFCEAL TDAGLVELAL GCGNSLKALG IAACAKITDV SLEAVGYYLR SGECKFGKAC  180
KYNHTIGKTS IAPLAPVLEF NFVGLPIRVG EKECPYYMRY PEHLSFLSRP AAIFRAPPVY  240
LPERNLPPPP AYVMNNPVTE INIYQHHPPQ KLIEEYPERP GQPECTFFLK TRDCKFKSNC  300
KYHHPKKTAM GAPPCA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.29e-24C3H family protein