PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025092.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 606aa    MW: 66639.9 Da    PI: 5.0189
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025092.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.11.1e-1082376052374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                            ++L++cA+   + + e+a + L rl+e +s++gdp++R++++f+eAL +r++ + ++ ++++  s++    s++ +  +k++++++P+
  HL.SW.v1.0.G025092.1 237 LKALIDCARLT-EAEPERAVKSLIRLKESVSEQGDPTERVTFHFAEALYNRVSLQADK-SSTMYESAS----SEDFTLPYKALNDACPY 319
                           689******65.5588999999*******************************83333.333333333....67899999********* PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                            kf+hltaNqaIlea+++++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++R+ g+ + + g   + +l +tg+rL +fA+ l+++f
  HL.SW.v1.0.G025092.1 320 SKFAHLTANQAILEATDRASKIHIVDFGIVQGVQWAALLQALATRSTGKPsKIRLSGIPALALGrtPAASLVATGNRLCEFAKLLELNF 408
                           **********************************************666659********99889999********************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           ef++ + + +++l+ +++rv+++E+laVn++lql++llde+    +   + L+l ksl+Pk++++ e ea++n+  F++rf +al+yy+
  HL.SW.v1.0.G025092.1 409 EFEP-ILTPISELNESSFRVEEDEVLAVNFMLQLYNLLDETPMAVQ---SALRLAKSLNPKILTLGEYEASLNQVGFMTRFKNALRYYT 493
                           ****.799******************************99888877...9*************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                           a+f+sle +l+r+s+er  vEr+++gr+i  vv  e+   +rer+e  ++W+  +e++ F+pv+ls++a++qak ll +++ s  +++ 
  HL.SW.v1.0.G025092.1 494 AVFESLEPNLSRDSRERLQVERVMFGRRIGCVVGPEEPGtKRERMEDRKQWKTLMEDCEFQPVNLSHYAVSQAKILLWNYNySSLFSLV 582
                           **********************************9988669****************************************9999**** PP

                  GRAS 353 eesgslv.lgWkdrpLvsvSaWr 374
                           e+s +++ l W+d pL++vS+Wr
  HL.SW.v1.0.G025092.1 583 ESSPAFLsLAWNDVPLLTVSSWR 605
                           ***99999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.371210583IPR005202Transcription factor GRAS
PfamPF035143.7E-106237605IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAIAQQVIKQ KQQQEQQQQQ SHQQQQLTGL SPFSLNPWTT TTHHTTMSNA PNLGGYGLAG  60
SGFPDPFLVT GGSDTGEPGF QFPHMDHHNT GFRFSDFGAG PGGEFESDEW MDSIMGGGDS  120
TDSSNLPSGC DAWQSNADFV LYGADPFTAC PSRLSVPCSS PSDLNRVLFT ESQKSPNPIQ  180
PQVSPWIPPQ APPSPPMVSK DSKSTNPPSH SVRRNDVIGG GGVSTSSPEI ESAPPLLKAL  240
IDCARLTEAE PERAVKSLIR LKESVSEQGD PTERVTFHFA EALYNRVSLQ ADKSSTMYES  300
ASSEDFTLPY KALNDACPYS KFAHLTANQA ILEATDRASK IHIVDFGIVQ GVQWAALLQA  360
LATRSTGKPS KIRLSGIPAL ALGRTPAASL VATGNRLCEF AKLLELNFEF EPILTPISEL  420
NESSFRVEED EVLAVNFMLQ LYNLLDETPM AVQSALRLAK SLNPKILTLG EYEASLNQVG  480
FMTRFKNALR YYTAVFESLE PNLSRDSRER LQVERVMFGR RIGCVVGPEE PGTKRERMED  540
RKQWKTLMED CEFQPVNLSH YAVSQAKILL WNYNYSSLFS LVESSPAFLS LAWNDVPLLT  600
VSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462356053375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010113493.10.0SCARECROW-LIKE protein 7
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2P5D3120.0A0A2P5D312_PARAD; GRAS transcription factor
STRINGXP_010113493.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein