PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G024404.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Trihelix

Protein Properties

Length: 497aa MW: 55822.4 Da PI: 6.4382

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G024404.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.9	9.8e-22	168	264	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt++ v++Li+++ ++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ ++++++ HL.SW.v1.0.G024404.1 168 KWTDNVVKLLIAVVACVGDDGMIAGgegpkrksgnlQKKGKWKTVSKIMIKKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVE 256 7************888888864334556667778********************************************6699999 PP trihelix 78 tcpyfdql 85 + ++ d++ HL.SW.v1.0.G024404.1 257 NPALMDSM 264 99888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.0E-19	166	291	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MFSLPDNTAR CRLLPLLPDA DTTPAHPGAP PPSDSGGRSF YTPIRAASPP GLGGGFLSGP 60 NGGLLDLESS IHRHQTSQLG HSSLAHPHPM NMIGGVESEH HPITLMEVKG STSKGISVLG 120 KGKAVAPMTS SHSYNISEED EPSYMEDGSG ENYDGAKGKK GSPWQRMKWT DNVVKLLIAV 180 VACVGDDGMI AGGEGPKRKS GNLQKKGKWK TVSKIMIKKG CHVSPQQCED KFNDLNKRYK 240 RLNDILGRGT SCRVVENPAL MDSMPHLSAK AKDDVKKTLS SKHLFYKEMC AYHNGQMIPD 300 CQDIDLQGCS LPLRGSKDSN PSEEEEAEEN HDSEEDDLDN EDDHNHDNGG ERMRDFGDRK 360 VNDDDGHFWT SPQESFEGEM AGFFQDPTKS LWERREWVEK QNLHLQEQRV NFHAQALELE 420 KQRFRWLRYC SKKDRELERL RLENERLKLE NERKVLQLKQ KELELDLRRP EAFIEHSPLG 480 HDRVPGRDQI DLGRHQ*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MFSLPDNTAR CRLLPLLPDA DTTPAHPGAP PPSDSGGRSF YTPIRAASPP GLGGGFLSGP  60
NGGLLDLESS IHRHQTSQLG HSSLAHPHPM NMIGGVESEH HPITLMEVKG STSKGISVLG  120
KGKAVAPMTS SHSYNISEED EPSYMEDGSG ENYDGAKGKK GSPWQRMKWT DNVVKLLIAV  180
VACVGDDGMI AGGEGPKRKS GNLQKKGKWK TVSKIMIKKG CHVSPQQCED KFNDLNKRYK  240
RLNDILGRGT SCRVVENPAL MDSMPHLSAK AKDDVKKTLS SKHLFYKEMC AYHNGQMIPD  300
CQDIDLQGCS LPLRGSKDSN PSEEEEAEEN HDSEEDDLDN EDDHNHDNGG ERMRDFGDRK  360
VNDDDGHFWT SPQESFEGEM AGFFQDPTKS LWERREWVEK QNLHLQEQRV NFHAQALELE  420
KQRFRWLRYC SKKDRELERL RLENERLKLE NERKVLQLKQ KELELDLRRP EAFIEHSPLG  480
HDRVPGRDQI DLGRHQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010102326.1	0.0	uncharacterized protein LOC21398378 isoform X1
TrEMBL	A0A2P5EUL9	0.0	A0A2P5EUL9_TREOI; Sequence-specific DNA binding transcription factor
STRING	XP_010102326.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10546	32	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-67	sequence-specific DNA binding transcription factors