PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G023059.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ZF-HD
Protein Properties Length: 398aa    MW: 44423.6 Da    PI: 8.3111
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G023059.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.36.8e-32116172360
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                           ++rY+eClkNhAas+Gg+++DGCgEfmps geeg+ +alkCaAC+CHRnFHR+e + e
  HL.SW.v1.0.G023059.1 116 AIRYRECLKNHAASTGGNVYDGCGEFMPS-GEEGSLEALKCAACQCHRNFHRKEIDGE 172
                           689*************************9.999********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-29117169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-24117170IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-30118169IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.698119168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.9E-19258325IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-29261325IPR009057Homeodomain-like
TIGRFAMsTIGR015654.9E-27264320IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEFRAQDNEM RTSPGTLTYN NHLSKEGGGG GGERRSRSAN ATHNHNHNHN GSTNTMSCTT  60
QTLDTNYPPR LNFQNQPLLH GSRDPDPDRV TTVPMTTTFS PSGASAKSSS KTTSSAIRYR  120
ECLKNHAAST GGNVYDGCGE FMPSGEEGSL EALKCAACQC HRNFHRKEID GESQLYSPSS  180
RRSSSTNATT LMLNALQLPP PLPSPSGFHH HHHHHKYFNH PPPIIQPMNV AFGGGGTESS  240
SEDLNVYGST AEAAAVPPPP FGSKKRFRTK FTQEQKDKML EFSEKVGWRF QKQDEEEVER  300
FCAEVGIRRQ VLKVWMHNNK STMMKTKPQD ANMVMNDDNM VSSNIDIHQS IDEGSSSLFL  360
NLIEKYVWIK ILLFLPWQKV SWRGLIRKSE FVEPNIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-242653221875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102085.11e-126zinc-finger homeodomain protein 5
TrEMBLA0A2P5F6L71e-135A0A2P5F6L7_TREOI; Octamer-binding transcription factor
STRINGXP_010102085.11e-126(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.12e-63homeobox protein 33