PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022937.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 270aa    MW: 29948.8 Da    PI: 8.085
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022937.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.7e-111479148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..................TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..................kgRtlkqcksrwqkyl 48
                          +g+WT  Ed++l  +++ +G g+W+  +++ g                  ++R++k+c++rw++yl
  HL.SW.v1.0.G022937.1 14 KGAWTVLEDKILTAYIEAHGEGQWRNLPKKAGkyinivyfyvhtfvfsvsLKRSGKSCRLRWLNYL 79
                          79**************************************************************97 PP
2Myb_DNA-binding51.32.8e-1685129147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  HL.SW.v1.0.G022937.1  85 RGNISLEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 129
                           78999*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.57979IPR017877Myb-like domain
SuperFamilySSF466899.98E-2511126IPR009057Homeodomain-like
SMARTSM007173.2E-91381IPR001005SANT/Myb domain
PfamPF002493.6E-101479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-201586IPR009057Homeodomain-like
CDDcd001677.31E-71679No hitNo description
PROSITE profilePS5129424.26680134IPR017930Myb domain
SMARTSM007177.2E-1484132IPR001005SANT/Myb domain
PfamPF002492.0E-1485129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2587135IPR009057Homeodomain-like
CDDcd001676.78E-1289130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRSPCCSKV GLNKGAWTVL EDKILTAYIE AHGEGQWRNL PKKAGKYINI VYFYVHTFVF  60
SVSLKRSGKS CRLRWLNYLR PDIKRGNISL EEEDLIIRLH KLLGNRWSLI AGRLPGRTDN  120
EIKNYWNTTL CKKLNKETKV KSSSYSGDDE EKATKKSNRV SSDSDAGGGG TTQVIRTRAS  180
RCTKVVIPTP TTTPLSTATI AGPPPPLLQD HDHGDCSGVD DFGAVPMPCD DTVLMNNNWT  240
TAVVDDCDPI NSSTVFNNCL CEEKNDDDYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-231213425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362847e-59AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884427.19e-77myb-related protein Zm38-like
TrEMBLA0A2P5B1971e-79A0A2P5B197_TREOI; GAMYB transcription factor
STRINGVIT_04s0008g01820.t016e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.18e-56myb domain protein 4