PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022727.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22663 Da    PI: 8.9454
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022727.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.6e-241861245
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          +i+nksn qvtfskRr g++KKA+EL++LC++eva+i+fs+ +k
  HL.SW.v1.0.G022727.1 18 KIQNKSNLQVTFSKRRSGLFKKASELCTLCGVEVALIVFSPANK 61
                          79***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.67969IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-34968IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-281092IPR002100Transcription factor, MADS-box
CDDcd002652.96E-341083No hitNo description
PRINTSPR004047.4E-201131IPR002100Transcription factor, MADS-box
PfamPF003193.3E-261865IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MKMNSTTKVG RKKIEMAKIQ NKSNLQVTFS KRRSGLFKKA SELCTLCGVE VALIVFSPAN  60
KPFAFGHPEL HSLLRRFLTH QNNNSTDHYG HVIGRHDQQL NDQLSCLLTQ LEEEKKKGRE  120
LNEEIRKDCY DNGQRKKMMW WWESAIEDEM ISFHELQQLK VSLEMLKDNV ALTREAHNTI  180
SNGDIFLKDL QFWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-16987183Myocyte-specific enhancer factor 2B
1tqe_Q3e-16987183Myocyte-specific enhancer factor 2B
1tqe_R3e-16987183Myocyte-specific enhancer factor 2B
1tqe_S3e-16987183Myocyte-specific enhancer factor 2B
6c9l_A3e-16987183Myocyte-specific enhancer factor 2B
6c9l_B3e-16987183Myocyte-specific enhancer factor 2B
6c9l_C3e-16987183Myocyte-specific enhancer factor 2B
6c9l_D3e-16987183Myocyte-specific enhancer factor 2B
6c9l_E3e-16987183Myocyte-specific enhancer factor 2B
6c9l_F3e-16987183Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481265.12e-48PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_016727587.12e-48PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_017632483.12e-48PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2P5EMT25e-62A0A2P5EMT2_TREOI; MADS-box transcription factor
STRINGXP_010095635.14e-49(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-47AGAMOUS-like 61