PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022712.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 314aa    MW: 34673.2 Da    PI: 10.3593
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022712.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.74.2e-1562144186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W++  v  L+ea+++++   +r+klk+ +We+v++++     +++  ++++qCk+k+e+++kry+ + + + +       ++p++++l
  HL.SW.v1.0.G022712.1  62 EWSEGAVSSLLEAYESKWVLRNRAKLKGLDWEDVARYVssraNSTKSPKTQTQCKNKIESMKKRYRSESTADAS-------SWPLYSRL 143
                           5*************************************88777778889999**************99988876.......48988888 PP

              trihelix  86 e 86 
                           +
  HL.SW.v1.0.G022712.1 144 D 144
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.4E-1860144No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDKETNNHYH HHHQESPSLL PNTTTAVAAS ATAITVIPKE ESPRKPLSGG GGGGGDRLKR  60
DEWSEGAVSS LLEAYESKWV LRNRAKLKGL DWEDVARYVS SRANSTKSPK TQTQCKNKIE  120
SMKKRYRSES TADASSWPLY SRLDLLLRGN GVPPTAAASA AVADDTGGIN KMLISDHASD  180
KNINNNSMDI TSDSSTPALY SEKTEKIRSS SRKAGTAVNK IMKRKRKKKR KEELEVAESI  240
RWLAEAVLKS EQARMEAMRE IERMRVEAEA KRAEMELKRT QIIANTQLEI AKLFASAVHV  300
GKAVDSSLRI GRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221228MKRKRKKK
2222230KRKRKKKRK
3223227RKRKK
4223231RKRKKKRKE
5224230KRKKKRK
6225231RKKKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027342812.11e-118trihelix transcription factor ASIL1-like
TrEMBLA0A2P5BX031e-153A0A2P5BX03_PARAD; Trihelix transcription factor
STRINGXP_009372813.11e-114(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.16e-78sequence-specific DNA binding transcription factors