PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022183.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 507aa    MW: 58361.7 Da    PI: 5.7417
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022183.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.51.4e-3151135187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW++qe+laL+e+r++m+ ++r+++ k+plWeevs+kmre+gf+rs+k+Ckek+en+ k++k++++g++++++++   +++f+qlea
  HL.SW.v1.0.G022183.1  51 RWPRQETLALLEIRSDMDAKFRDSSIKAPLWEEVSRKMREHGFNRSAKKCKEKFENIYKYHKRTRDGRSGKSNGKA--YRFFEQLEA 135
                           8********************************************************************9866665..*******85 PP
2trihelix104.86e-33342427187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                           rW+k+ev aLi++r++++++++++  k+plWe++s++m++ g++rs+k+Ckekwen+nk++k++k+++k+r  e+s+tcpyf+ql+a
  HL.SW.v1.0.G022183.1 342 RWPKDEVDALIRLRTNLDTQYQDNGPKGPLWEDISAAMKKLGYNRSSKRCKEKWENINKYFKRVKDSNKRR-VEDSKTCPYFHQLDA 427
                           8********************************************************************98.78889********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004448110IPR001005SANT/Myb domain
PfamPF138371.7E-2050136No hitNo description
PROSITE profilePS500907.03950108IPR017877Myb-like domain
CDDcd122034.59E-2550115No hitNo description
Gene3DG3DSA:1.10.10.606.4E-5338398IPR009057Homeodomain-like
SMARTSM007179.1E-4339401IPR001005SANT/Myb domain
PfamPF138372.0E-22341428No hitNo description
CDDcd122032.66E-24341406No hitNo description
PROSITE profilePS500907.642341399IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLENSTLPEN LSATTPENGE VGDSGGLAPV GHGEEERMGA EDGERSWLGN RWPRQETLAL  60
LEIRSDMDAK FRDSSIKAPL WEEVSRKMRE HGFNRSAKKC KEKFENIYKY HKRTRDGRSG  120
KSNGKAYRFF EQLEALDHHS FDHPFPPSGD KVNAFLDEAK TTAAATRTSP TDVVINAIPC  180
SIHKPASNLD DSSPSNTTSS SQESRGMRKQ KRRLTEFFER LMKEVTDSQE KLQRKFIETL  240
EKCEQDRLAR EEAWKKQELE RIKRESDLLV QERSIAAAKD AAVLAFLKKF SEQTEPFQFP  300
EYPIVDVDKQ EKNHSGNDEQ TCLDNQEKLN NNRKFVQVSS SRWPKDEVDA LIRLRTNLDT  360
QYQDNGPKGP LWEDISAAMK KLGYNRSSKR CKEKWENINK YFKRVKDSNK RRVEDSKTCP  420
YFHQLDALYN KKTKNVDDSE NTGYDLRPEE LLMHMMGGQE QQQQPETVTE NGESENLSHN  480
HEGDDEIVDK DEYKDTTDPS SMEIMG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098893.10.0trihelix transcription factor GT-2
SwissprotQ391171e-124TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2P5ED760.0A0A2P5ED76_TREOI; TFIIB transcription factor
STRINGXP_010098893.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-66Trihelix family protein