PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G021584.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 379aa    MW: 42798 Da    PI: 8.574
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G021584.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51.1e-17341071390
                           TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                            ++l +pkkf ++  +k   +  +tl+ + g +W+v +  + ++++ +++ GW+eFv+++gL e+D ++Fk++g+s f
  HL.SW.v1.0.G021584.1  34 DRQLAIPKKFSSSLRNK--LPEFVTLKGPGGGTWSVGV--TTNGDTLYFKHGWQEFVNDHGLVENDLLIFKYSGKSHF 107
                           4679******9988655..6667***************..********************************998777 PP
2B336.96.5e-122623461398
                           TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                    B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                           ++r  lp + + ++ + +++  ++       ++W+ +++y++ +++  l++GW++F+ +n+L+e D++vF+      ++f l vk+fr
  HL.SW.v1.0.G021584.1 262 NRRPLLPTDWVMKYISLENQ--DVF-LRFGEKEWRTRFNYNQLRKSAALSSGWNHFAVDNNLEEFDVCVFQPGsPVnNSFCLDVKIFR 346
                           56667777777777333233..344.44577****************************************54222477777787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.69E-1922107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.22522115IPR003340B3 DNA binding domain
CDDcd100175.95E-1724107No hitNo description
Gene3DG3DSA:2.40.330.102.7E-1924108IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-1625115IPR003340B3 DNA binding domain
PfamPF023621.0E-1434107IPR003340B3 DNA binding domain
SMARTSM010190.032256348IPR003340B3 DNA binding domain
CDDcd100173.28E-11260346No hitNo description
PfamPF023621.8E-9261346IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-11263346IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-13266346IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.418290348IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGDSCMECTK WAEEIYWTHF QDLHFSQIMA TGFDRQLAIP KKFSSSLRNK LPEFVTLKGP  60
GGGTWSVGVT TNGDTLYFKH GWQEFVNDHG LVENDLLIFK YSGKSHFERC GHKKDDHGGS  120
LIKKKSRRAS SDKSNNGSFE NVECTSVEKS RNFDGLWVQS GEPVITLTND QVVRRRSVNR  180
HIVSSSNDGS LVPSGEPFIT PTTDEQVAVN ATSFRPIRTT RNHNAINEES SPGSGELLYV  240
SEAEHTPTKR SGASYGVQFL SNRRPLLPTD WVMKYISLEN QDVFLRFGEK EWRTRFNYNQ  300
LRKSAALSSG WNHFAVDNNL EEFDVCVFQP GSPVNNSFCL DVKIFRVVEE ITPLTTISSP  360
ISRKNKRKLI KNEKQSIV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089922.11e-118B3 domain-containing protein REM16
RefseqXP_024017087.11e-118B3 domain-containing protein REM16
TrEMBLA0A2P5D9Z90.0A0A2P5D9Z9_PARAD; B3 DNA binding domain containing protein
STRINGXP_010089922.11e-118(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-52B3 family protein