PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G020215.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 311aa    MW: 36158.8 Da    PI: 6.2216
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G020215.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.81.9e-2028115286
              trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                           Wt+qe+ +Li+a++e++ +l+rg lk  +Weev+  +      + +  +++++qC++k+e+l++ry+++k++ +   s  +s +pyfd 
  HL.SW.v1.0.G020215.1  28 WTHQETVHLIQAYEEKWYSLKRGPLKSSQWEEVAVTVaarcgyEYTEPSKTAIQCRHKMEKLRQRYRAEKKRLSL--S-GVSVWPYFDL 113
                           ***********************************998666666666689************************9..3.4559*****9 PP

              trihelix  85 le 86 
                           ++
  HL.SW.v1.0.G020215.1 114 MD 115
                           98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2027117No hitNo description
PROSITE profilePS500906.2142790IPR017877Myb-like domain
SMARTSM005954.3E-735122IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MAMATTPPPP PPAAAASVSG KKPQPIPWTH QETVHLIQAY EEKWYSLKRG PLKSSQWEEV  60
AVTVAARCGY EYTEPSKTAI QCRHKMEKLR QRYRAEKKRL SLSGVSVWPY FDLMDRLERG  120
PLPISARPMI ALPYHRDRDR EDGEDDEDEE NDSGDEGEDG DVIRTKSRSI DYILKRPTTV  180
NRFDGEGERG RNVNGFSRVW AEPVTKRPRE TVVEEEEYGE DDLDGDEESN AKVEFLDERR  240
RRRERKREVV LKLAAEIRAF SERFVGMESM KMEIMKDTER CRREMETKRI EMILRSQNKI  300
VDSITKAFRF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237243ERRRRRE
2239247RRRRERKRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892407.11e-108trihelix transcription factor ASIL1
TrEMBLA0A2P5CIE11e-120A0A2P5CIE1_TREOI; Myb-like domain containing protein
STRINGXP_004292373.12e-89(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.14e-53Trihelix family protein