PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G019610.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 710aa    MW: 80965.4 Da    PI: 5.6052
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G019610.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.13.2e-1103397073374
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL++cA+av+s d++ a++lL++++e++sp+gd  qRla+yf+++L+ rl++ ++  y+ l ++ +s     + l+a++++  ++P+ 
  HL.SW.v1.0.G019610.1 339 TLLTQCAQAVASYDQRTATQLLKQIREHSSPHGDESQRLAHYFANGLEVRLSG-GTPSYSHLGSNGAS---AFDLLKAYQVYITACPFK 423
                           79***************************************************.66666666666665...79**************** PP

                  GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           ++sh+ aN++Il+  e+++r+HiiDf++ +G+QWp+L+q L++Rp+gpp+lR Tgv+ p++g   +e++ +tg+rL++++e+++vpfe 
  HL.SW.v1.0.G019610.1 424 RMSHIYANRTILKLSEKASRIHIIDFGVLYGFQWPCLIQRLSERPGGPPMLRFTGVEFPQPGfrPSERVIQTGRRLTNYCERFNVPFEC 512
                           *************************************************************9*************************** PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           n+ +a+++e++++e+L+++++E ++Vn+  ++++l+de+v  + +rdevL+l+++++P+++++   +  hn++ Fl+rf eal ++sa 
  HL.SW.v1.0.G019610.1 513 NM-IAQKWETVKIEDLKLDRDELTVVNCLDRMKNLPDETVIEDCPRDEVLRLIRRTNPDLFIHGVVNGTHNAPFFLTRFREALFHFSAQ 600
                           **.7**********************************999999********************************************* PP

                  GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                           fd++ea+lpre+++r + E+e++gr++vnvva eg +r+er et+++W+ r  +aGF++v l+ + +k ++ +++k++ + + v+e+  
  HL.SW.v1.0.G019610.1 601 FDMFEASLPREDQHRLMFEKEVFGRDVVNVVAGEGLQRVERPETYKQWQVRNVRAGFRQVGLDGELVKLVRNMVKKHYHRDFVVDEDGM 689
                           ******************************************************************************999******** PP

                  GRAS 357 slvlgWkdrpLvsvSaWr 374
                           ++++gWk+r   ++S+Wr
  HL.SW.v1.0.G019610.1 690 WMLQGWKGRIFQAMSCWR 707
                           *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.721311687IPR005202Transcription factor GRAS
PfamPF035141.1E-107339707IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MDTLFEDLHG SMNNNFRFEH DPQNLDHDYN KGNHEFIDPI SPPTNSDLQG EPSPSSASGS  60
SSEGDSLESG EFSNAIILRF INEVLMDEQE ELEKKPCMLH DCLALQTAEK SFYDVIGEEY  120
PSPLPCLDQK FENPNHQYVQ SFSNDSSIGS STITSLSNLG VDSNWVWNQG EVGSFAVQSP  180
SIESPEDTLL TPDSYGETTR PPWHLGGEAV QGKSGFFLPT KLNRTAFAIP ENHDSHFSTL  240
DGSEGKKGHH QREFGTDSPE EEEGRSNKQT AVYPDFSEPT EFFDEVLLCP KPTQNDNEPC  300
AFNENDDNKP RQQRKKQQPK RTKQKKRNNS NRGLVDFTTL LTQCAQAVAS YDQRTATQLL  360
KQIREHSSPH GDESQRLAHY FANGLEVRLS GGTPSYSHLG SNGASAFDLL KAYQVYITAC  420
PFKRMSHIYA NRTILKLSEK ASRIHIIDFG VLYGFQWPCL IQRLSERPGG PPMLRFTGVE  480
FPQPGFRPSE RVIQTGRRLT NYCERFNVPF ECNMIAQKWE TVKIEDLKLD RDELTVVNCL  540
DRMKNLPDET VIEDCPRDEV LRLIRRTNPD LFIHGVVNGT HNAPFFLTRF REALFHFSAQ  600
FDMFEASLPR EDQHRLMFEK EVFGRDVVNV VAGEGLQRVE RPETYKQWQV RNVRAGFRQV  660
GLDGELVKLV RNMVKKHYHR DFVVDEDGMW MLQGWKGRIF QAMSCWRPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-443157083380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317325QPKRTKQKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897035.10.0scarecrow-like protein 30
TrEMBLA0A2P5D6F50.0A0A2P5D6F5_TREOI; GRAS transcription factor
STRINGPOPTR_0009s03850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-172GRAS family protein