PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G018587.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 322aa    MW: 34561.2 Da    PI: 8.9703
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G018587.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.61.6e-191257147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  HL.SW.v1.0.G018587.1 12 KGPWSPEEDDALQKLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                          79******************************.***********985 PP
2Myb_DNA-binding56.27.8e-1866108347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  HL.SW.v1.0.G018587.1  66 AFTAEEDETIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                           79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.94762IPR017930Myb domain
SuperFamilySSF466893.38E-329105IPR009057Homeodomain-like
SMARTSM007171.6E-171160IPR001005SANT/Myb domain
PfamPF002492.6E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-261365IPR009057Homeodomain-like
CDDcd001671.16E-161456No hitNo description
SMARTSM007176.9E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129421.01264113IPR017930Myb domain
CDDcd001673.07E-1266109No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2366112IPR009057Homeodomain-like
PfamPF002493.6E-1566108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAITRKEMDR IKGPWSPEED DALQKLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRAFTAE EDETIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSTMFEES  120
NGHGGGGGYD SNYPQPLKRS VSAGSAMPVS TGLYMNPGSP SGSDVSDSSV PAALSPSHVY  180
RPVARTGAVL PPVETASSSN DPPTSLSLSL PGVDSCEVSN RVVESIQNSS MMNLLPAMNP  240
SLPPPAPAVA AGSNGEGENG VFVPFSKELL VVMQEMIRKE VKNYMAGMVV EQNGACLPPP  300
QTAVDGFRNV AVKRIGISKI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-42111123104C-Myb DNA-Binding Domain
1msf_C4e-42111123104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015865918.11e-164transcription factor MYB44
RefseqXP_015890262.11e-164transcription factor MYB44-like
SwissprotO231601e-114MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2P5AFM11e-178A0A2P5AFM1_PARAD; MYB transcription factor
STRINGXP_010095320.11e-155(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-99myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]