PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G017741.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 575aa    MW: 62341.7 Da    PI: 6.8653
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G017741.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31221278260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  er++ d++++ei+Y+g+H+h+k
  HL.SW.v1.0.G017741.1 221 EDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAH-DGQITEIIYKGTHDHPK 278
                           7***************************************9.***************85 PP
2WRKY106.21.6e-33393451159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  HL.SW.v1.0.G017741.1 393 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 451
                           59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.48E-24219279IPR003657WRKY domain
SMARTSM007741.8E-33220278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-26220279IPR003657WRKY domain
PfamPF031062.5E-24221277IPR003657WRKY domain
PROSITE profilePS5081122.378221279IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37378453IPR003657WRKY domain
SuperFamilySSF1182901.96E-29385453IPR003657WRKY domain
PROSITE profilePS5081138.825388453IPR003657WRKY domain
SMARTSM007743.1E-39393452IPR003657WRKY domain
PfamPF031063.4E-26394451IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MEAAAADLHH RRSDDVDPGR NEFPDPPSGC GGAKYKLLSP AKLPISRSAC LTIPPGLSPS  60
SFLESPVLLS NMKAEPSPTT GTFLKPQMAQ GSVGTATYSA TTVYSNINVS DNKSSSTFEF  120
KPHALANMVT TDQNSLRNAQ SMQVQGQSQS FGTVSLVKSE VAVNSNELGF SSAARGVVAS  180
GTSASADGDS DELNQRGNPN SGVQTAQFDH KGNGPSVISS EDGYNWRKYG QKHVKGSEFP  240
RSYYKCTHPN CEVKKLFERA HDGQITEIIY KGTHDHPKPQ PSRRYNTGSI MSAQEERSDK  300
FSSIIGRDDK SSSIYGQASN TNEPNGTPDQ SPIATNDDIV EATGNRINDD VDDDDPFSKR  360
RKMEIGCFDV TPVVKPIREP RVVVQTLSEV DILDDGYRWR KYGQKVVRGN PNPRSYYKCT  420
NAGCPVRKHV ERASHDPKAV ITTYEGKHNH DVPNARNSSH EMVGSMAANI PARIRLEETD  480
TISLDLGVGI SSATDNRSNE QHPTAQSELM ESRSHNSNVN VAQAGTTFFG ILGNGLNQYG  540
SRENIGEGRS VELSTLNHSS CPYPQNMGRI LTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-37200453577Probable WRKY transcription factor 4
2lex_A6e-37200453577Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097277.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2P5F8K30.0A0A2P5F8K3_TREOI; WRKY domain containing protein
STRINGXP_010097277.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein