PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G015633.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 595aa    MW: 64489.7 Da    PI: 4.6919
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G015633.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4531.9e-1382265891374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           lv++L++cAeav++++l+la+al++++  la++++ +m+++a+yf+eALa+r+++    +y    ps+  +++ s+ l+    f+e++P
  HL.SW.v1.0.G015633.1 226 LVHTLMACAEAVQQDKLKLADALVKHIGMLAASQAGAMRKVATYFAEALARRIYG----IY----PSDCLDSSYSDMLQ--MHFYETCP 304
                           689****************************************************....44....44443333455544..46****** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +lkf+h+taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+g+p +R+Tg+g+p+s+++++l+++g++La++Ae++gv+fef
  HL.SW.v1.0.G015633.1 305 YLKFAHFTANQAILEAFATSNRVHVIDFGLKQGMQWPALMQALALRPGGAPAFRLTGIGPPQSDNTDALQQVGWKLAQLAETIGVEFEF 393
                           ***************************************************************************************** PP

                  GRAS 179 nvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           + +va++l+dl++++++++p   E++aVn+v++lhrll+++++ e+    v   +k ++Pk+v+vveqea+hns+ Fl+rf+e+l+yys
  HL.SW.v1.0.G015633.1 394 RGFVANSLADLKPSMFDLRPaeVETVAVNSVFELHRLLARPGAAEK----VFGSIKAMRPKIVTVVEQEANHNSPVFLDRFTESLHYYS 478
                           *******************98899******************9999....*************************************** PP

                  GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                           +lfdsle + +++  +++ ++++++lg++i+nvvaceg +r+erhetl +Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrve
  HL.SW.v1.0.G015633.1 479 TLFDSLEGSSSSTPpSQDLVMSEVYLGKQICNVVACEGPDRVERHETLDRWRGRFGMAGFDPVHLGSNAFKQASMLLALFAgGDGYRVE 567
                           ******8887666679************************************************************************* PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                           e++g+l+lgW++rpL+++SaW+
  HL.SW.v1.0.G015633.1 568 ENNGCLMLGWHSRPLIATSAWQ 589
                           *********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.0E-3557123IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011292.9E-3957129No hitNo description
PROSITE profilePS5098567.047200568IPR005202Transcription factor GRAS
PfamPF035146.5E-136226589IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MKMKREHPDS CGGARAGALG YGGTNINGGA NNGGECSSLP NSKAKIWEEE QETGGMDELL  60
AVLGYKVRSS DMADVAQKLE QLEMVLGSAQ EDGICQLSDT VHYNPSDLSG WVQSMLSELN  120
NPATNLDPSS VLTNRQIDDS DFLPPPESSS IIAGVDFSAD DSEYDLRAIP GVAAYPHPRI  180
ESPADDNPHK RLRTSIGLEG ANEVAESAES ALALVMVDSQ ETGVRLVHTL MACAEAVQQD  240
KLKLADALVK HIGMLAASQA GAMRKVATYF AEALARRIYG IYPSDCLDSS YSDMLQMHFY  300
ETCPYLKFAH FTANQAILEA FATSNRVHVI DFGLKQGMQW PALMQALALR PGGAPAFRLT  360
GIGPPQSDNT DALQQVGWKL AQLAETIGVE FEFRGFVANS LADLKPSMFD LRPAEVETVA  420
VNSVFELHRL LARPGAAEKV FGSIKAMRPK IVTVVEQEAN HNSPVFLDRF TESLHYYSTL  480
FDSLEGSSSS TPPSQDLVMS EVYLGKQICN VVACEGPDRV ERHETLDRWR GRFGMAGFDP  540
VHLGSNAFKQ ASMLLALFAG GDGYRVEENN GCLMLGWHSR PLIATSAWQL ATDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6722158814378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109004.20.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A2P5AXY70.0A0A2P5AXY7_PARAD; DELLA transcription factor
STRINGXP_010109004.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein