PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G013026.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 389aa    MW: 42042.9 Da    PI: 10.3654
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G013026.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16.2e-1577164186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k+  + +  ++ s++p++d+l
  HL.SW.v1.0.G013026.1  77 CWSEGATSVLIDAWGERYLELSRGNLKQKHWKEVADIVsgrdDYTKAAKTDIQCKNRIDTVKKKYKLEKAKLSAG--GVPSKWPFYDRL 163
                           7*************************************97666666778999*********************97..88999******9 PP

              trihelix  86 e 86 
                           e
  HL.SW.v1.0.G013026.1 164 E 164
                           8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-2575165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEEDDEIQSH LSPGSASPAA SPASPRPVGR ITVTVAAAPP QQQAAHNALT LALPIQTRNG  60
GGGGERGSGG GGGREDCWSE GATSVLIDAW GERYLELSRG NLKQKHWKEV ADIVSGRDDY  120
TKAAKTDIQC KNRIDTVKKK YKLEKAKLSA GGVPSKWPFY DRLEHLIGPT VKIAGSGGGH  180
NAVALVNSSA QQTQKVPLGI PVRGVSPFQG QRDQKPLHHQ QVQLKNQKMQ YKRRGPVDSG  240
SSREASPAST DSFPMDFYER KRARTAREMN VNANSNSNPG RGGGGGGGAF KGGKEKKGWG  300
NAVKELTQAI LKFGEAYEQA ESSKLQQVVE MEKQRMNFAK ELELQRMQFF MKTQLEISQL  360
KHGRRGGIGN ASNHHHSNNN NNNSDSSN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026698.11e-172trihelix transcription factor ASIL2
RefseqXP_024026700.11e-172trihelix transcription factor ASIL2
SwissprotQ9LJG81e-95ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2P5F6R20.0A0A2P5F6R2_TREOI; Trihelix transcription factor
STRINGXP_010104605.11e-154(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.19e-76sequence-specific DNA binding transcription factors