PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G012943.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 355aa    MW: 39745.4 Da    PI: 7.4052
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G012943.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.5e-0990114126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC  f   G C+ G++C+FaHg
  HL.SW.v1.0.G012943.1  90 FKTRLCAKFKV-GLCRNGENCNFAHG 114
                           79*********.*************8 PP
2zf-CCCH28.33e-09155177325
                           S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                           ++lC+ f+ + +C+yGdrC+F H
  HL.SW.v1.0.G012943.1 155 MKLCKKFYNGEECPYGDRCNFLH 177
                           689******66************ PP
3zf-CCCH41.62.1e-13237262126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC+ + +tG+C++G++C+FaHg
  HL.SW.v1.0.G012943.1 237 WKTKLCNKWEQTGHCPFGEKCHFAHG 262
                           8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-1387122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-888120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.63389116IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-589115IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-690114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117152180IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4152179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7152179IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-7155177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-9155178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-15232262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-9233264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76236264IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-7236263IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10237262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSFPDSRSQF MQSIPAYVGG TDAINCWPQF SMNNEDQQSE FEQQSQPPPF KRARNSDDES  60
QSNTSPFPPM NTRMIPPNAP VNKGVSNIFF KTRLCAKFKV GLCRNGENCN FAHGIEDMRQ  120
PPPNWQELVG GRERDNEDRS SSGNWEDDQK IIHRMKLCKK FYNGEECPYG DRCNFLHEDP  180
AKYRDDLGRF RESSAISIGT TPPPPANQGN VPSNSDDNRA VNSVSDSSRV NVKPVYWKTK  240
LCNKWEQTGH CPFGEKCHFA HGYAGTQSAL HKLQMANGRV EVDALNIASS LQAKPQAVAI  300
DSLPSATTAA AFDEDVQGKK CLMKWKGPKK INRIYGDWLD DLPLVHNLPS RVES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088337.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT814e-91C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A2P5DYM90.0A0A2P5DYM9_PARAD; Zinc finger, CCCH-type
STRINGXP_010088337.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-92C3H family protein