PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G011828.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Trihelix

Protein Properties

Length: 502aa MW: 56536.3 Da PI: 6.5481

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G011828.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.9	1e-21	173	269	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt++ v++Li+++ ++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ ++++++ HL.SW.v1.0.G011828.1 173 KWTDNVVKLLIAVVACVGDDGMIAGgegpkrksgnlQKKGKWKTVSKIMIKKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVE 261 7************888888864334556667778********************************************6699999 PP trihelix 78 tcpyfdql 85 + ++ d++ HL.SW.v1.0.G011828.1 262 NPALMDSM 269 99888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.5E-19	171	296	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MFSLPDNTAR FRPLPLLPDA GTTQQLAGAP RSSSTFRLLR AVLLHTDPSS FSSSSGLGGG 60 FLSGPNGGLL DLESSIHRHQ TSQLGHSSLA HPHPMNMIGG VESEHHPITL MEVKGSTSKG 120 ISVLGKGKAV APMTSSHSYN ISEEDEPSYM EDGSGENYDG AKGKKGSPWQ RMKWTDNVVK 180 LLIAVVACVG DDGMIAGGEG PKRKSGNLQK KGKWKTVSKI MIKKGCHVSP QQCEDKFNDL 240 NKRYKRLNDI LGRGTSCRVV ENPALMDSMP HLSAKAKDDV KKILSSKHLF YKEMCAYHNG 300 QMIPDCHDID LQGCSLPLRG SKDSNPSEEE EAEENHDSEE DDLDNEDDHN HDNGGERMRD 360 FGDRKVNDDD GHFWTSPQES FEGEMAGFFQ DPTKSLWERR EWVEKQTLHL QEQRVNFHAE 420 ALELEKQRFR WLRYCSKKDR ELERLRLENE RMKLENERKV LQLKQKELEL DLRRPEAFIE 480 HSPLGHDRVP GRDQIDLGRH Q*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MFSLPDNTAR FRPLPLLPDA GTTQQLAGAP RSSSTFRLLR AVLLHTDPSS FSSSSGLGGG  60
FLSGPNGGLL DLESSIHRHQ TSQLGHSSLA HPHPMNMIGG VESEHHPITL MEVKGSTSKG  120
ISVLGKGKAV APMTSSHSYN ISEEDEPSYM EDGSGENYDG AKGKKGSPWQ RMKWTDNVVK  180
LLIAVVACVG DDGMIAGGEG PKRKSGNLQK KGKWKTVSKI MIKKGCHVSP QQCEDKFNDL  240
NKRYKRLNDI LGRGTSCRVV ENPALMDSMP HLSAKAKDDV KKILSSKHLF YKEMCAYHNG  300
QMIPDCHDID LQGCSLPLRG SKDSNPSEEE EAEENHDSEE DDLDNEDDHN HDNGGERMRD  360
FGDRKVNDDD GHFWTSPQES FEGEMAGFFQ DPTKSLWERR EWVEKQTLHL QEQRVNFHAE  420
ALELEKQRFR WLRYCSKKDR ELERLRLENE RMKLENERKV LQLKQKELEL DLRRPEAFIE  480
HSPLGHDRVP GRDQIDLGRH Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010102326.1	0.0	uncharacterized protein LOC21398378 isoform X1
TrEMBL	A0A2P5EUL9	0.0	A0A2P5EUL9_TREOI; Sequence-specific DNA binding transcription factor
STRING	XP_010102326.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10546	32	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-68	sequence-specific DNA binding transcription factors