PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G009754.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 323aa MW: 35845.9 Da PI: 7.4037

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G009754.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.5	4.5e-36	60	118	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++lkcprCds+ntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++++ HL.SW.v1.0.G009754.1 60 PEQLKCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAK 118 6899************************************************8777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	54	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-31	62	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.512	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MGLSSKQVVI NRDGLDWSHS LLLQQPDQYT TTTAATNFQP QAKSPAMSTP GIRRQQQPPP 60 EQLKCPRCDS SNTKFCYYNN YNKSQPRHFC RACKRHWTKG GTLRNVPVGG GRKNKRAKKS 120 TTTSATATAT TSTSPTTTPT PAAPIDNRLN SHVMFQAHGH DDHDQKSISE ILYQAVMIRP 180 PPPPPQPLPL LPPSYHHNKD HLMINNTTNN GVKSSMAFPA SFSSSSTSPF ESFPSSFETS 240 DIVDYGHEDQ FKLMAESTVS QQPPWLVVPE ATTSNNNNNN NGMVMDNMPS YLNWDDDEID 300 TLVSTDHINL PWDDSHLDII KP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2P5FE76	4e-90	A0A2P5FE76_TREOI; Zinc finger, Dof-type

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-31	DOF zinc finger protein 1