PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009649.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 284aa    MW: 32265.1 Da    PI: 7.5802
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009649.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63e-3327654129
                   NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           +ekew+fF+++d+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgek++Wvmheyrle
  HL.SW.v1.0.G009649.1   2 GEKEWHFFCQKDRKYPTGLRTNRATDAGYWKATGKDKEIFK-GKTLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 76 
                           578**************************************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.5181104IPR003441NAC domain
SuperFamilySSF1019413.27E-372104IPR003441NAC domain
PfamPF023657.1E-16675IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGEKEWHFFC QKDRKYPTGL RTNRATDAGY WKATGKDKEI FKGKTLVGMK KTLVFYKGRA  60
PKGEKSNWVM HEYRLEGKYS VYNLSRENKA RESNEWVICR IFQKSCGGKK THISGLVRLS  120
PYGNELRPSL LPPLMESSPP YNNDPRTTVG NTSSNSTATH VTCFSDPMEE QKSQPEAMIE  180
SLNNHQHQHL LHQSSVFSHN QIQQSFGNLQ YADSLLMQDD SILSMLIENN PGPEMKGCRS  240
ETDYSPQETG LRTNDMAPHR SFDDQNDPSS SVGPVDLDCL WNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-33111068171NO APICAL MERISTEM PROTEIN
1ut4_B3e-33111068171NO APICAL MERISTEM PROTEIN
1ut7_A3e-33111068171NO APICAL MERISTEM PROTEIN
1ut7_B3e-33111068171NO APICAL MERISTEM PROTEIN
3swm_A3e-33111071174NAC domain-containing protein 19
3swm_B3e-33111071174NAC domain-containing protein 19
3swm_C3e-33111071174NAC domain-containing protein 19
3swm_D3e-33111071174NAC domain-containing protein 19
3swp_A3e-33111071174NAC domain-containing protein 19
3swp_B3e-33111071174NAC domain-containing protein 19
3swp_C3e-33111071174NAC domain-containing protein 19
3swp_D3e-33111071174NAC domain-containing protein 19
4dul_A3e-33111068171NAC domain-containing protein 19
4dul_B3e-33111068171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088131.11e-124NAC domain-containing protein 100
SwissprotQ9FLJ21e-89NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2P5FEZ91e-133A0A2P5FEZ9_TREOI; NAC domain containing protein
STRINGXP_010088131.11e-124(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.15e-80NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]