PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009399.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 589aa    MW: 65401.6 Da    PI: 4.2709
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009399.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-5391371129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           l+pGfrFhPtdeelv++yLk+kv gk++++ + i+ vdiyk+ePwdLp k k+k+++ ewyfFs  dkky +g r+nrat++gyWk+tg
  HL.SW.v1.0.G009399.1   9 LAPGFRFHPTDEELVSYYLKRKVCGKSVRV-DPISVVDIYKTEPWDLPdKsKLKSRDLEWYFFSALDKKYGNGWRTNRATEKGYWKTTG 96 
                           579**************************9.89**************95347777888******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           kd+++++ k++ vg+kktLvf++grapkg +t+Wvmheyrle
  HL.SW.v1.0.G009399.1  97 KDRPIIH-KSRIVGMKKTLVFHTGRAPKGARTNWVMHEYRLE 137
                           *******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-637159IPR003441NAC domain
PROSITE profilePS5100558.2889159IPR003441NAC domain
PfamPF023652.3E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MSRNSSTSLA PGFRFHPTDE ELVSYYLKRK VCGKSVRVDP ISVVDIYKTE PWDLPDKSKL  60
KSRDLEWYFF SALDKKYGNG WRTNRATEKG YWKTTGKDRP IIHKSRIVGM KKTLVFHTGR  120
APKGARTNWV MHEYRLEDEE LKNAGIQQDA FVLCRIFQKS GTGPKNGEQY GAPFVEEEWE  180
DDEVPGEEAP TGEVLLGDGA FVDVIEPDQT FGTIVPSGFP AIPSDYQHED TTNYVQNSGD  240
FAEDGPSEVA PPPAFYYGET SNYIEHSGDY AEDGSKPIIG REISELGERQ TVFELPVQYE  300
MNAPVKDEYF VQPSISENPA EEYIVPPSNS GNPVDANYSL PGQYLDATDY LPFGEGLYLE  360
TNDLSKPIED DLADVDIDYL SFFDANDDIS QYLDFDSFEN PGIENNVTEE EPPLQTLVTG  420
EPEAVPMGTR QSVEEHPDTS RASSSNQKAD VTKFESDFKY QFSKQASQML GSIPAPPAFA  480
AEFPTKDVAV LNSVAQSSSS VHVTAAMIRI RNLSVDGNGM GWSYGKNENV DFFLSDLSSA  540
SMVSMVPMAD TLSGKTASVV SKGLFFFMFI WVLIISVSFK VGSHICTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-48815914168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017429.10.0NAC domain-containing protein 53
TrEMBLA0A2P5FLD20.0A0A2P5FLD2_TREOI; NAC domain containing protein
STRINGXP_010090439.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-151NAC domain containing protein 2