PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G009368.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 735aa    MW: 79827.4 Da    PI: 6.7528
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G009368.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07308328526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+ f++ G C++Gd C +aHg
  HL.SW.v1.0.G009368.1 308 PCPEFRK-GACRRGDMCEYAHG 328
                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.4E-1839186IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-1745180IPR020683Ankyrin repeat-containing domain
CDDcd002046.10E-1686177No hitNo description
PROSITE profilePS5029717.36987180IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-987155IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001187117IPR002110Ankyrin repeat
PROSITE profilePS5008811.568122157IPR002110Ankyrin repeat
SMARTSM002481.8E-4122154IPR002110Ankyrin repeat
SMARTSM003569.5E-6303329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981308330IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4308328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4336366IPR000571Zinc finger, CCCH-type
SMARTSM0035638338361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MCCGSEKLKP ISSSTPSPVS INESRVTNIA MNHLTVQTED TFASLLELAA NNDIEGFKRS  60
IERDPSSVDE PGLWYGRQKG SKVMVNEQRT PLMVAATYGS IDVVQLILSL SVADVNCHCG  120
LDRSTALHCA ASGGAKNAVD VVRLLLAAGA DPNLIDGNGH FPLDVIIVHP KLQDVKLALE  180
ELLQTNGSAI ERTLTVSTRT VNSSSPTLSS SSENGSPLGQ DFISSPSRSK FIDYPVSSVS  240
EKKEYPIDPS LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KFHYSCVPCP EFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC ARRVCFFAHT  360
PEELRPLYVS TGSAVPSPRT GTSGAAAMDF AAAMNMLPGS PSSMSVMSPS PFTPPISPSA  420
NGMPHASVGW PQPNVPALHL PGSNLQSSRL RSSLHARDIP AEGFDLLSDF EMQQQQQLLN  480
ELSCLSQPSL SSNSLNRSGR LKTLTPSNLD DLFSAESSSP RYSDQGLPSA VFSPTHKSAV  540
INQFQQQQTM LSPINTNFSP KNDHPLMHQS SFGVPSSGRM SPRNMEPISP MGSRVSMLAQ  600
RDKQQFRSLS SRELGSNSAS IVGSPVNSWS KWGSSNGKPD WAVSTDELGK HRRSSSFELG  660
NNGEEPDLSW VQSLVKESPT EMKEKSTASV SGVSASTSSN EGSNVNPQME GVDHAVLGAW  720
LEQMQLDHLV AQQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092985.10.0zinc finger CCCH domain-containing protein 30 isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2P5F1N50.0A0A2P5F1N5_TREOI; Transmembrane protein
STRINGXP_010092985.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]