PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008818.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 458aa    MW: 51147.7 Da    PI: 10.1243
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008818.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07845233
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......T CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......k 33
                          g W t+E++ll  av ++G+++W+t+a+++        
  HL.SW.v1.0.G008818.1  8 GEWGTWEELLLGGAVLRHGTRDWDTVAAELRaralcpY 45
                          79***************************997444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002497.0E-6858IPR001005SANT/Myb domain
SuperFamilySSF473705.36E-19259370IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.4E-17260371IPR001487Bromodomain
SMARTSM002973.5E-17265369IPR001487Bromodomain
CDDcd043692.34E-7272364No hitNo description
PfamPF004391.6E-12273353IPR001487Bromodomain
PROSITE profilePS5001410.374280350IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGTAVMEGEW GTWEELLLGG AVLRHGTRDW DTVAAELRAR ALCPYNFTAE VCKAKYEDLQ  60
HRYTGCTAWF EELRKKRMAE LRQALEHSED SIGSLETKLE TLKAEKGHSR VNCASSQTES  120
PLTFQKSEGV DSFSKESKDG LSAGSFTLET RTSWSAECQI PSTVSAEETE TKPKDLHSFE  180
TVEASITEKL EDNAHERQGR ILKKRRGKRK RKDCSRDIKE SSVGESGFLD SAEAITVFLS  240
KENTTSDCGE VSRSSGFDNQ SKGTKKDSID DLLKIFNSIV EHKCASTFLR RLDSQKRGRY  300
KKMIRKHMDF DTLRSRITSH SVVSVEELFR DLLLLANNAL VFYTKNTREH KSALLLRDLA  360
TKTLRQHFND SRSIKAASAN LSVITTQSSP PPPPPVKPES VHSGNKNLAV KPTHSKINDA  420
AKSPKKGSSL ARRVGRKSNT QQQTVAPVKG RKRGRTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201208LKKRRGKR
2202207KKRRGK
3204212RRGKRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105623.10.0uncharacterized protein LOC21384416
TrEMBLA0A2P5G0U60.0A0A2P5G0U6_TREOI; Bromodomain containing protein
STRINGXP_010105623.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.15e-27DNA-binding bromodomain-containing protein