PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G008667.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GRAS

Protein Properties

Length: 756aa MW: 85352.1 Da PI: 4.9061

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G008667.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	361.6	1.1e-110	381	752	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lL+ cA+avss+d a +lL+++++++s +gd qRla++f+++L arla+ +++ + + ++ ++ + s+ l+a++l +P HL.SW.v1.0.G008667.1 381 LRTLLILCAQAVSSDDRGTAYELLKQIRQHSSHNGDGSQRLAHFFANGLDARLAGIGTG--ALFYSNLLANVKASDILKAYHLNLSSCP 467 5789*************************************************5554..4466667776789*********** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 + k++ + aN+ Il +e+++ +Hi+Df+i +G+QWp ++q L++R++gpp+lRiTg++ p++g k ++eetg+rLak++e++gvpf HL.SW.v1.0.G008667.1 468 FKKMAMFFANKNILHVAEKATNLHIVDFGILYGFQWPIFIQYLSKRSGGPPNLRITGIEFPQNGfrPKARIEETGRRLAKYCERFGVPF 556 ***********************************************************9********************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 ++n++++k++e++++e+++++++E++aVn+ ++ ++l+e+v++ r++vL+l+++++P +++ + ++n++ F++rf e l ++s HL.SW.v1.0.G008667.1 557 RYNAIAVKNWESIRVEDMKIESNEVVAVNCLIRFNNILEETVESCP-RNAVLSLIRKMNPAIFINNIVNGSYNAPFFVTRFREVLFHFS 644 **********************************99888887.************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 alfd+l+++++re+eer+++Ere+ greivnv+aceg+er+er et+++W+ r +aGF+++pl+++++++ k lr+ + + + ++e+ HL.SW.v1.0.G008667.1 645 ALFDMLDTNMARENEERMMYEREFYGREIVNVIACEGEERVERPETYKQWQVRTLRAGFRSLPLNQEIMSKFKEKLRTWYHKDFVIDED 733 ****************************************************************************888** PP GRAS 355 sgslvlgWkdrpLvsvSaW 373 s+++++gWk+r +++ S+W HL.SW.v1.0.G008667.1 734 SNWMLQGWKGRIVYASSCW 752 ***************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.255	355	733	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-108	381	752	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MDPSFSEYSD FTNGFKIENQ TIIPNSNEHS VLSDEYLLNQ HSPYFDLVND YPNLFIPDPD 60 PGNFMPSMNL SSLEEPSFPS STLSPDGNSP TPSSVSPGGD SSNDEKEFSI YVLKFINQIL 120 MEENMEEKPN KFDDPLELQV TEKSFYDALG ESYSYSANQS PVDQKVETPD SNFSVSSSDY 180 GGSSTCTSTS NSTSHDASSP QLLSDVGDHK ASSLQPFLPG DNNFQFDLVS AQNLFRDSDS 240 ISQFQRGVEE ASKFLPKGNQ FIIDLESNGF SPQLRTEAVV VKTERESSPN GSRGRKNHER 300 EDDDSEEERS NKQSAHYIDE SDLSEMFDKV LLQVDHSCGQ CGETEPGQSE ASKALQLAES 360 NANGGKGRGK RQNKKKETVD LRTLLILCAQ AVSSDDRGTA YELLKQIRQH SSHNGDGSQR 420 LAHFFANGLD ARLAGIGTGA LFYSNLLANV KASDILKAYH LNLSSCPFKK MAMFFANKNI 480 LHVAEKATNL HIVDFGILYG FQWPIFIQYL SKRSGGPPNL RITGIEFPQN GFRPKARIEE 540 TGRRLAKYCE RFGVPFRYNA IAVKNWESIR VEDMKIESNE VVAVNCLIRF NNILEETVES 600 CPRNAVLSLI RKMNPAIFIN NIVNGSYNAP FFVTRFREVL FHFSALFDML DTNMARENEE 660 RMMYEREFYG REIVNVIACE GEERVERPET YKQWQVRTLR AGFRSLPLNQ EIMSKFKEKL 720 RTWYHKDFVI DEDSNWMLQG WKGRIVYASS CWVPA*

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MDPSFSEYSD FTNGFKIENQ TIIPNSNEHS VLSDEYLLNQ HSPYFDLVND YPNLFIPDPD  60
PGNFMPSMNL SSLEEPSFPS STLSPDGNSP TPSSVSPGGD SSNDEKEFSI YVLKFINQIL  120
MEENMEEKPN KFDDPLELQV TEKSFYDALG ESYSYSANQS PVDQKVETPD SNFSVSSSDY  180
GGSSTCTSTS NSTSHDASSP QLLSDVGDHK ASSLQPFLPG DNNFQFDLVS AQNLFRDSDS  240
ISQFQRGVEE ASKFLPKGNQ FIIDLESNGF SPQLRTEAVV VKTERESSPN GSRGRKNHER  300
EDDDSEEERS NKQSAHYIDE SDLSEMFDKV LLQVDHSCGQ CGETEPGQSE ASKALQLAES  360
NANGGKGRGK RQNKKKETVD LRTLLILCAQ AVSSDDRGTA YELLKQIRQH SSHNGDGSQR  420
LAHFFANGLD ARLAGIGTGA LFYSNLLANV KASDILKAYH LNLSSCPFKK MAMFFANKNI  480
LHVAEKATNL HIVDFGILYG FQWPIFIQYL SKRSGGPPNL RITGIEFPQN GFRPKARIEE  540
TGRRLAKYCE RFGVPFRYNA IAVKNWESIR VEDMKIESNE VVAVNCLIRF NNILEETVES  600
CPRNAVLSLI RKMNPAIFIN NIVNGSYNAP FFVTRFREVL FHFSALFDML DTNMARENEE  660
RMMYEREFYG REIVNVIACE GEERVERPET YKQWQVRTLR AGFRSLPLNQ EIMSKFKEKL  720
RTWYHKDFVI DEDSNWMLQG WKGRIVYASS CWVPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-49	385	752	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020420703.1	0.0	scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P5D669	0.0	A0A2P5D669_TREOI; GRAS transcription factor
STRING	XP_008245986.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]