PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G008541.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 869aa    MW: 97059.7 Da    PI: 4.6085
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G008541.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-09810862147
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqky 47 
                           + +WT eE+++l+++v++++++   Wk++ +       +gRt+ ++k++w++ 
  HL.SW.v1.0.G008541.1 810 KVPWTVEEELKLKEGVQKFPKErnMWKKVLEFGDsvfmEGRTAIDLKDKWRNM 862
                           579******************9*******9987799999************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.66E-7548602IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.1E-6551600IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:1.10.10.603.4E-12804864IPR009057Homeodomain-like
PROSITE profilePS5129412.327805868IPR017930Myb domain
SuperFamilySSF466892.81E-11807864IPR009057Homeodomain-like
SMARTSM007179.5E-6809865IPR001005SANT/Myb domain
PfamPF002492.1E-7810861IPR001005SANT/Myb domain
CDDcd116604.57E-14811864No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MDNLHASEST LAWLWVIEAM ASFKEVDPSL LRDVIEAAPE LPDDLGKNTK EIVALRCLEG  60
LFSSQNEIAS DVPSAQGLKV GFDLSVSCED VLQRILQETL GSNSRVSGPE LSRWDIHPFI  120
AHKRACMPKC ALEQLKDTIL DGTHPYADFL RDKGRLATSL EDINLMDDSN RDSVTTRPNF  180
SGTDVQNEVN PDLLIPEKRN KQLGENHHDG AILPSKRDRS GSASKGMACN VHEDCNGETN  240
SEVQHMNAKR LKQYESSDNQ FVEQNPVPFH GSEPLEHSSE RDVSVTTREL PENEMGTMGE  300
SGVLENGCND ESNKNMVQFP CNSPVMPQIN SGEEANHQHL SVDEANVVSN HCAQSGGAFE  360
PVEQDTVTLH GKEPTKDSSK LDVQVPVEEA TFTENDYTVS NRSQQSNDDE INKNQSENLY  420
DAPSLMQDTT RDDPHQNLSV DDTNNVSEPS TEPVGVPSHD TVDNISTKES KSSHEHDFPL  480
QEQNPMSNDG SRQNIIAGEA EEDTNDCGEA EKSSDSDGYH NERIDVDKRK LEFLRSQCTV  540
GHDSLNVDWT EKYLCMKCNK AGSLLVCNTN NCQLVIHEKC GGSLAKFDDM GNFYCPFCAY  600
SLAIMEYLEA KKRSSVANKE LAAFILMGSK RYPEESTRSL IKERNHSTGG NADEDVLRQN  660
HENEHLGVRE KNEEDDHQCE KNFVNQEAVI SAHNDNNRGG CHVSAGEIEG REKMAKECPS  720
ARAEVPQNVS SGNSEVNLVN EGKSDIGIQR KLLDQDIDLT KRSVIESHDS IEDDSENDNH  780
ESTVSDYCIS FRKRENRRSD SASPQKRRKK VPWTVEEELK LKEGVQKFPK ERNMWKKVLE  840
FGDSVFMEGR TAIDLKDKWR NMCKGIPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212219LPSKRDRS
2791809RKRENRRSDSASPQKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018435.10.0uncharacterized protein LOC21385959
TrEMBLA0A2P5F1Q10.0A0A2P5F1Q1_TREOI; GAMYB transcription factor
STRINGXP_010091860.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-08MYB_related family protein