PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G008411.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 756aa MW: 86279 Da PI: 6.6749

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G008411.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.8	4.7e-20	59	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtklele 84 +fY++++k++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+vt ++++ HL.SW.v1.0.G008411.1 59 EFYCSFGKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRAGYPQMKPSEDGKLQRNRKSSRCGCQAYMRIVKRAefdhVPEWRVTGFSNN 147 6*************999887455667****************9***************988876655578***** PP FAR1 85 HnHela 90 HnHel HL.SW.v1.0.G008411.1 148 HNHELL 153 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-17	59	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-21	276	367	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	540	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.6E-7	562	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-5	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MSEGTSLVIE SSENGTDLSQ DDVGTTGETS DDTILSRQTS VNLVPFICQR FVSQEAAYEF 60 YCSFGKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRAGYP QMKPSEDGKL QRNRKSSRCG 120 CQAYMRIVKR AEFDHVPEWR VTGFSNNHNH ELLKSNEVCM LPTYCIISPD DKSRICLFAK 180 AGMSVRQMLR LMELEKGVKL GCLPFTEIDV RNLLQSFRNI DRDNDAIDLI SMCKKLKDEN 240 PNFKYDFKID GHNRLDHIAW SYASSVQSYE AFGDAVIFDT THRLDAYDML LGIWLGVDNY 300 GMTCFFGCVL LRDENMQSFS WALKTFLFFM KGKAPQTLLT DHNTWLKESI VNEMPQTKHA 360 FCIWHIISKF SNWFSVLLGS RYDEWKTEFH HLYNLDVADD FEEGWRDMVS KYGLQTNRHI 420 ISLYALRTFW ALAFLRHFFF AGMMNTFQAE LINAFIQRFL STQSQMDRFV HHLADVVEFK 480 DRAGAKQKMQ QKMQKVCLKT GSPIEAHAAS VLTPYAFNKF QEELVLAPQY ASVPIDDGCF 540 QVRHHTQMDG GCKVIWLPCQ EHISCSCHQF EFSGILCKHV LRVLSTNNCF QIPDEYLPSR 600 WRDVSSSSTY TFQNTSMREH SGKVQLLESM ASALVAESVE TDERLDSACE QIAMVLSRIK 660 GLPRPMHDTN DDYSCPSDAL ILQEVEDADG IVSFTVGNPH DSISTGKLKE RRPRDGLDIA 720 RKRRAGSCCE QFGHDASECQ LMGGDHLNGD ALGYL*

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MSEGTSLVIE SSENGTDLSQ DDVGTTGETS DDTILSRQTS VNLVPFICQR FVSQEAAYEF  60
YCSFGKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRAGYP QMKPSEDGKL QRNRKSSRCG  120
CQAYMRIVKR AEFDHVPEWR VTGFSNNHNH ELLKSNEVCM LPTYCIISPD DKSRICLFAK  180
AGMSVRQMLR LMELEKGVKL GCLPFTEIDV RNLLQSFRNI DRDNDAIDLI SMCKKLKDEN  240
PNFKYDFKID GHNRLDHIAW SYASSVQSYE AFGDAVIFDT THRLDAYDML LGIWLGVDNY  300
GMTCFFGCVL LRDENMQSFS WALKTFLFFM KGKAPQTLLT DHNTWLKESI VNEMPQTKHA  360
FCIWHIISKF SNWFSVLLGS RYDEWKTEFH HLYNLDVADD FEEGWRDMVS KYGLQTNRHI  420
ISLYALRTFW ALAFLRHFFF AGMMNTFQAE LINAFIQRFL STQSQMDRFV HHLADVVEFK  480
DRAGAKQKMQ QKMQKVCLKT GSPIEAHAAS VLTPYAFNKF QEELVLAPQY ASVPIDDGCF  540
QVRHHTQMDG GCKVIWLPCQ EHISCSCHQF EFSGILCKHV LRVLSTNNCF QIPDEYLPSR  600
WRDVSSSSTY TFQNTSMREH SGKVQLLESM ASALVAESVE TDERLDSACE QIAMVLSRIK  660
GLPRPMHDTN DDYSCPSDAL ILQEVEDADG IVSFTVGNPH DSISTGKLKE RRPRDGLDIA  720
RKRRAGSCCE QFGHDASECQ LMGGDHLNGD ALGYL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019988.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_024019989.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2N9EMT4	0.0	A0A2N9EMT4_FAGSY; Uncharacterized protein
STRING	XP_007138969.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]