PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G008311.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GRAS

Protein Properties

Length: 637aa MW: 72574.6 Da PI: 7.7141

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G008311.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	352.4	7e-108	262	634	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lL++cAeav+ +d e a++lL +++ ++s +g+ qRla+yf +AL+arl++ ++ ly al++++ s + ++l++ +lf ++P HL.SW.v1.0.G008311.1 262 LRNLLTHCAEAVAVNDRETATELLLQIRRNSSFSGNGSQRLAHYFGNALEARLNGIGNDLYTALAAKRMS---VLTSLKSCRLFLSACP 347 689**********************************************************9999998...9*********** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 ++k+s++ N++Ile +e+++++Hii f+i +G+QWp+L+q L+ +++gpp lRiTg++ p +g + +leetg+rLa ++++++vpf HL.SW.v1.0.G008311.1 348 LIKLSNFFINHTILELAEKANTLHIIHFGILNGFQWPSLIQRLSMKSGGPPLLRITGIDLPLPGfrPAARLEETGDRLAYYCKRFNVPF 436 *********************************************************99999******************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 +++ +a+++e+++ e+L++++++ ++Vn+ + +lld+++ l+s rd+vLklvk++ P++++ + +n++ F +rf eal+y+s HL.SW.v1.0.G008311.1 437 TYKP-IAQAWENITCEDLNINKDDITVVNSLYLFRYLLDDTAGLHSSRDAVLKLVKRTHPDIFIQGIVNGAYNAPFFTTRFREALYYFS 524 .7******************************************************************************* PP GRAS 266 alfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353 ++fd+lea+ p+e ++r+++Ere+ g+ei nvvace ++r+er et+++W++r +aG+k++pls +++k+++ + + ++ + + v+e HL.SW.v1.0.G008311.1 525 TVFDMLEANSPPEFeQDRKVYERECYGKEILNVVACESSKRVERPETYKQWHARNLRAGLKQLPLSREIMKKVEQMKASCYHKDFLVDE 613 **9998888769999**********************************************************888* PP GRAS 354 esgslvlgWkdrpLvsvSaWr 374 +s+++++gWk+r L+++S+W+ HL.SW.v1.0.G008311.1 614 DSQWMLQGWKGRVLYALSCWK 634 ******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.482	236	614	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-105	262	634	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 637 aa Download sequence Send to blast
MSTFPPDQEE APLLNCISKI LLEEDMEEGT YFFSDATVEA AQRPFSDALA EKNSSERRLI 60 SAPRSYASRQ HINLVHNNTT TTPNYSSDHC FNVDQPFLLN DVFSSTIHEP YCSYNSIITA 120 LPVINYNFQP SSSTTPRHAD KMVIDFEGDN PMIPLKLMKE IPSKGKSQYN HLNGGLLMKR 180 KSVNQLEIET LAGRKDKQLT VYSDHDSELY AETFDMVLLA NGWQNGLETS KRRESKVSNN 240 SNYIAKTRRR KWAGGEEDLL DLRNLLTHCA EAVAVNDRET ATELLLQIRR NSSFSGNGSQ 300 RLAHYFGNAL EARLNGIGND LYTALAAKRM SVLTSLKSCR LFLSACPLIK LSNFFINHTI 360 LELAEKANTL HIIHFGILNG FQWPSLIQRL SMKSGGPPLL RITGIDLPLP GFRPAARLEE 420 TGDRLAYYCK RFNVPFTYKP IAQAWENITC EDLNINKDDI TVVNSLYLFR YLLDDTAGLH 480 SSRDAVLKLV KRTHPDIFIQ GIVNGAYNAP FFTTRFREAL YYFSTVFDML EANSPPEFEQ 540 DRKVYERECY GKEILNVVAC ESSKRVERPE TYKQWHARNL RAGLKQLPLS REIMKKVEQM 600 KASCYHKDFL VDEDSQWMLQ GWKGRVLYAL SCWKPA*

Sequence ? help Back to Top

Protein Sequence Length: 637 aa Download sequence Send to blast

MSTFPPDQEE APLLNCISKI LLEEDMEEGT YFFSDATVEA AQRPFSDALA EKNSSERRLI  60
SAPRSYASRQ HINLVHNNTT TTPNYSSDHC FNVDQPFLLN DVFSSTIHEP YCSYNSIITA  120
LPVINYNFQP SSSTTPRHAD KMVIDFEGDN PMIPLKLMKE IPSKGKSQYN HLNGGLLMKR  180
KSVNQLEIET LAGRKDKQLT VYSDHDSELY AETFDMVLLA NGWQNGLETS KRRESKVSNN  240
SNYIAKTRRR KWAGGEEDLL DLRNLLTHCA EAVAVNDRET ATELLLQIRR NSSFSGNGSQ  300
RLAHYFGNAL EARLNGIGND LYTALAAKRM SVLTSLKSCR LFLSACPLIK LSNFFINHTI  360
LELAEKANTL HIIHFGILNG FQWPSLIQRL SMKSGGPPLL RITGIDLPLP GFRPAARLEE  420
TGDRLAYYCK RFNVPFTYKP IAQAWENITC EDLNINKDDI TVVNSLYLFR YLLDDTAGLH  480
SSRDAVLKLV KRTHPDIFIQ GIVNGAYNAP FFTTRFREAL YYFSTVFDML EANSPPEFEQ  540
DRKVYERECY GKEILNVVAC ESSKRVERPE TYKQWHARNL RAGLKQLPLS REIMKKVEQM  600
KASCYHKDFL VDEDSQWMLQ GWKGRVLYAL SCWKPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-48	268	635	25	380	Protein SCARECROW
5b3h_A	1e-48	268	635	24	379	Protein SCARECROW
5b3h_D	1e-48	268	635	24	379	Protein SCARECROW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	250	KRRESKVSNNSNYIAKTRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015873960.1	0.0	scarecrow-like protein 33
TrEMBL	A0A2P5D652	0.0	A0A2P5D652_TREOI; GRAS transcription factor
TrEMBL	A0A2P5DQI7	0.0	A0A2P5DQI7_PARAD; GRAS transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-154	GRAS family protein