PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G008147.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 343aa MW: 38542.1 Da PI: 5.7649 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.6 | 1.1e-27 | 117 | 178 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK++ g+++prsY+rCt++ gC ++k+v+rs++d +++eitY+g H+++ HL.SW.v1.0.G008147.1 117 MEDGHSWRKYGQKDILGANHPRSYFRCTHRktqGCLATKQVQRSDQDSSILEITYKGYHTCR 178 58***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-27 | 108 | 178 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.241 | 112 | 175 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-25 | 115 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-40 | 117 | 179 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-26 | 118 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEKKTDFEQK FLINELMEGK ELAKQLMGYL QPSSSHETRD VLVEKILSSY EKALSVLKWD 60 GETKPRQSSP CSFGNNSPKS VIIDQDSNHR DVFKKRKTTV KSEQVKVCVG TGSEGHMEDG 120 HSWRKYGQKD ILGANHPRSY FRCTHRKTQG CLATKQVQRS DQDSSILEIT YKGYHTCRRA 180 SQPAIVASSS LTKMSHFPHP EVVHKDKLKQ SQEKPFSLEV KTEDLDTSED HMFQPFSFAS 240 TPIESEDIPF FSEMIESDFA GGFSSPFISP TTSDSAYFSV SPCHKMSSFG LANSVRTPES 300 DLTEILSAPT SLANSPMCDL DLSLDNVDFE MNFPFDSDEY FS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-19 | 116 | 178 | 7 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095789.1 | 1e-139 | probable WRKY transcription factor 46 | ||||
TrEMBL | A0A2P5DTC4 | 1e-166 | A0A2P5DTC4_TREOI; WRKY domain containing protein | ||||
STRING | XP_010095789.1 | 1e-138 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 3e-50 | WRKY DNA-binding protein 46 |