PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007910.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TALE
Protein Properties Length: 674aa    MW: 73367.4 Da    PI: 8.6766
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007910.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-094204571954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+++++  LAk++gLt +qV++WF N R +
  HL.SW.v1.0.G007910.1 420 FEHflHPYPKTADKVMLAKQTGLTRSQVSNWFINARVR 457
                           554459******************************88 PP
2BELL116.99.5e-38281352172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +rqelq kkakL s+l+eV++rY+qy++q+++vissFe+++g gsak+Yt+lAlk+iS++FrcLkdai+ qi
  HL.SW.v1.0.G007910.1 281 QRQELQVKKAKLASMLDEVEQRYRQYHQQMNVVISSFEQAVGFGSAKSYTALALKTISKQFRCLKDAISAQI 352
                           69********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-58200350IPR006563POX domain
PfamPF075264.8E-48205349IPR006563POX domain
PROSITE profilePS5007112.179398461IPR001356Homeobox domain
CDDcd000866.27E-13401462No hitNo description
SMARTSM003895.0E-10401465IPR001356Homeobox domain
SuperFamilySSF466893.64E-17402468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-28404467IPR009057Homeodomain-like
PfamPF059204.7E-18418457IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MATYFNHGSS EIQGPDGLHT LYLMNPNNYV QTYSDSTTSQ PPPPHPAANM FLLNPNQLQQ  60
HHHSRHLTGV PISSAGANAV PGSNSDDISA FAGTSTTPSH LQYNIWGSMD HHNQRSVGIS  120
SADFASQMGF RRQVVSPTQQ ALSLSLSSTH PQAAYAAASL SGEIEVVPTM LPTGGHDSIR  180
SFAGNSLSST VSNNGIGTSG QLQSVLLGSK YLKAAQELLD EVVKVGSKGG KDAVDSANGA  240
SKDKAMKSYR ESTPPPEMGG SRNSGGESSS SKISAELSTV QRQELQVKKA KLASMLDEVE  300
QRYRQYHQQM NVVISSFEQA VGFGSAKSYT ALALKTISKQ FRCLKDAISA QIKATSKTLG  360
EEECLGVKIE GSRLRFVDHH LRQQRALQQL GMMPHNNNNA WRPQRGLPER AVSVLRAWLF  420
EHFLHPYPKT ADKVMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYIEE TKGHEDQLKG  480
INNANKNDAN KESTTGAAAN STADDGSNNA FQYSKSDHNH LQKNHSSADQ ISSSSFSTTP  540
MGRSFHGSPK KPRSTTTNSE VQNSSSSILS IGHMDMMKGS TDQYNRPDNV AFGRSERQIS  600
TYPVGFGTYQ VGGLGRFHSR DHHDHELMAP SLFHGNAVSL TLGLPHCENH TLSSETAQQS  660
FLSNPQNIDP LFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-16407465563Homeobox protein Meis2
3k2a_B8e-16407465563Homeobox protein Meis2
4xrs_A6e-16407464158Homeobox protein Meis1
4xrs_B6e-16407464158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089795.10.0BEL1-like homeodomain protein 1
RefseqXP_024017018.10.0BEL1-like homeodomain protein 1
RefseqXP_024017019.10.0BEL1-like homeodomain protein 1
RefseqXP_024017020.10.0BEL1-like homeodomain protein 1
TrEMBLA0A2P5FUB90.0A0A2P5FUB9_TREOI; Homeodomain transcription factor
STRINGXP_010089795.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3220522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-110BEL1-like homeodomain 1