PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007743.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 385aa    MW: 42558 Da    PI: 5.8912
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007743.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT  Ed++l ++++ +G g W++ +++ g++R++k+c++rw++yl
  HL.SW.v1.0.G007743.1 14 RGAWTVMEDKILSEYIRVHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61
                          89********************************************97 PP
2Myb_DNA-binding52.98.4e-1767110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T++E+el+++++++lG++ W++Ia +++ gRt++++k++w++
  HL.SW.v1.0.G007743.1  67 RGNITPDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                           7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.913961IPR017930Myb domain
SuperFamilySSF466896.12E-2812108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002494.7E-141461IPR001005SANT/Myb domain
CDDcd001674.55E-101661No hitNo description
PROSITE profilePS5129424.82162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2465116IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002494.9E-1567110IPR001005SANT/Myb domain
CDDcd001672.24E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTVM EDKILSEYIR VHGEGKWRSL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TPDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKVHQVQ  120
ASDSSPKSNN TTSRKPSSKI RCSTSRLEQL RPKPKTTHSG GTGTDADHEM KTSKTNNSPA  180
GSNNVVRTIA TRCTKVVLLS QTEPQNKVVP PDRDNNRITN DHTASGGTSS NDDDDQDCTK  240
SDPAVDDCWL PSVVDYDDQF ANNCGQSVVL DSSVITLDVP SYSQLGMMNN NAVDFESSED  300
HGDYLSEFLN VDFGFVNNGD VAGQVISSSN QKGLACSKSY TTDYDNNNNN ETFFFSQDMM  360
FGVDLASASA SLLSDPVDMD WLHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295831e-106KP229583.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB27) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107990.11e-92myb-related protein Zm38
TrEMBLA0A2P5AGV91e-137A0A2P5AGV9_PARAD; MYB transcription factor
STRINGXP_010107990.14e-92(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-63myb domain protein 3