PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G007727.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HB-other | ||||||||
Protein Properties | Length: 222aa MW: 25259.2 Da PI: 4.0778 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.4 | 3.1e-05 | 189 | 218 | 12 | 41 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLte 41 +e+L ++F++n ps++ +e L+k+lgL+ HL.SW.v1.0.G007727.1 189 VERLRQVFAENELPSRDVKENLSKELGLDS 218 789*************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-6 | 176 | 218 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.78E-4 | 178 | 217 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEIFEAVNAH LGTYFSMNNS WEDVFEGEAA LPEDANASLH PDVEWPSDDS EDENYDPERK 60 ENSNSISGAD SDDNVWEDEF SSDGSVGSDE SDAGVVCGRR QRRDVDYRKL YDEMFGKDAP 120 PYEQISEDED WGPAKRKRRE KESDAASTLM TLFESEKVNS DVDVEDVGRK LPPEAQIRRS 180 FFRIPRIAVE RLRQVFAENE LPSRDVKENL SKELGLDSEK Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 140 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015893916.1 | 1e-108 | pathogenesis-related homeodomain protein isoform X1 | ||||
Refseq | XP_015893988.1 | 1e-108 | pathogenesis-related homeodomain protein isoform X2 | ||||
Swissprot | P48785 | 5e-47 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A2P5C6N9 | 1e-125 | A0A2P5C6N9_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010087997.1 | 1e-102 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 3e-47 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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