PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007682.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 533aa    MW: 57863.7 Da    PI: 5.2177
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007682.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.77.2e-991375241374
                  GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykal...ppsetsekn.....ssee 77 
                           l++lL+++Aea+   +++  la+ +L rl+el+sp+g ++++Rl a+fteAL++ l + ++s+  +a      ++    +     +s++
  HL.SW.v1.0.G007682.1 137 LIHLLMAAAEALGGANKSrdLARVILVRLKELVSPTGgTNIERLSAHFTEALQHLLDGaMGSSSGHANkhfVNNHH---RrdhdhQSDV 222
                           689*********876666559***************9899****************98655544443310122222...12336799** PP

                  GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetg 162
                           +aa++l++++sP++kf+h+taNqaIleav++++r+Hi+D+di++G+QW++L+qaL sR+egpp  +lRiT++++   g  s  +++etg
  HL.SW.v1.0.G007682.1 223 VAAFQLLQDMSPYVKFGHFTANQAILEAVAHDRRIHIVDYDIMEGIQWASLMQALVSRKEGPPapHLRITALSRGGGGrrSIGTVQETG 311
                           ***********************************************************886656*********665598999****** PP

                  GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...... 245
                           +rL  fA+++g pf+f+    ++ e++++ +L++ +gEal++n++l+l ++  +s ++     ++L+  ksl+P+++ +ve+e      
  HL.SW.v1.0.G007682.1 312 RRLVAFAASIGQPFSFHQCRLDSDEAFRPAALKLVKGEALVINCMLNLPHFSYRSPESVA---SFLSGSKSLNPRLIALVEEEtcptpa 397
                           ******************9999*****************************977666666...9*******************766654 PP

                  GRAS 246 .adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                            a  +++ F++rf++ l+ ysa++dslea++p +s++r+ vEr++lg++i+  +    +    r e+ ++W + l +aGFk+ ++s+ +
  HL.SW.v1.0.G007682.1 398 tAPGGEGAFVARFMDLLYQYSAVYDSLEAGFPMQSRARALVERVFLGPRISGSLGRVYRG---RGEENSSWGQSLCAAGFKSESVSSAN 483
                           2233667***********************************************999998...778888******************** PP

                  GRAS 334 akqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                            +qaklll  ++ dgyrvee  s+ lvlgWk+r+L+s+S W+
  HL.SW.v1.0.G007682.1 484 LCQAKLLLGLFN-DGYRVEELaSNRLVLGWKSRRLLSASLWT 524
                           ************.******8769999***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.887111504IPR005202Transcription factor GRAS
PfamPF035142.5E-96137524IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MTDLVSSSAM AMAVDMDMII DEALELDLSG YSTTTTTTTT NTTTPEDDHG CAWNAWSPVV  60
DWSTLTGGHD NFHDLIESMM ESEEEEDADG ELNSAHNCGY NSNSSEPSMA VVEDEYSAGD  120
SSTSTTVLVE DDKGLRLIHL LMAAAEALGG ANKSRDLARV ILVRLKELVS PTGGTNIERL  180
SAHFTEALQH LLDGAMGSSS GHANKHFVNN HHRRDHDHQS DVVAAFQLLQ DMSPYVKFGH  240
FTANQAILEA VAHDRRIHIV DYDIMEGIQW ASLMQALVSR KEGPPAPHLR ITALSRGGGG  300
RRSIGTVQET GRRLVAFAAS IGQPFSFHQC RLDSDEAFRP AALKLVKGEA LVINCMLNLP  360
HFSYRSPESV ASFLSGSKSL NPRLIALVEE ETCPTPATAP GGEGAFVARF MDLLYQYSAV  420
YDSLEAGFPM QSRARALVER VFLGPRISGS LGRVYRGRGE ENSSWGQSLC AAGFKSESVS  480
SANLCQAKLL LGLFNDGYRV EELASNRLVL GWKSRRLLSA SLWTSSSSHY SD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5113052712382Protein SCARECROW
5b3h_A1e-5113052711381Protein SCARECROW
5b3h_D1e-5113052711381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015903123.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2P5E5P10.0A0A2P5E5P1_TREOI; Nodulation signaling pathway 2
STRINGXP_010091366.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-142GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]