PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G007232.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 326aa    MW: 34507 Da    PI: 5.9683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G007232.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10174218554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  HL.SW.v1.0.G007232.1 174 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 218
                           99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-15167228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-11167223No hitNo description
PROSITE profilePS5088816.526169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15171229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7174218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAGNPPENLG DDFLEQILAG QQSYTGGGGD MGSMPMVLQL GSGAGNVSGG SGPGGGFRGV  60
GMGMGMPLGL NLEQGFLRHD RFRDEVEVNN TNNNTNNLSS PVNATSAINE RDSVHMASLF  120
PAFGHLQNQS VRAAPPPPPP QLHQPTAPQV APAPQPPTMR PRVRARRGQA TDPHSIAERL  180
RRERIAERMK ALQELVPSCN KTDRAAMLDE IVDYVKFLRL QVKVLSMSRL GGAGAVAQLV  240
ADVPLSSVEG GGIEGGDSQA AWEKWSTDGT EQQVAKLMEE DVGAAMQFLQ SKALCIMPIS  300
LASAIFRTHQ PDGPTMVKPE SNSPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875423.11e-155transcription factor UNE12-like isoform X1
RefseqXP_015875424.11e-155transcription factor UNE12-like isoform X2
SwissprotO227684e-82UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2P5DKN11e-150A0A2P5DKN1_PARAD; Basic helix-loop-helix transcription factor
STRINGEMJ066851e-145(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]