PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G007114.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

SBP

Protein Properties

Length: 112aa MW: 12355.5 Da PI: 11.3918

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G007114.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	48.3	2.6e-15	4	34	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 +fh lsefD++krsCr+rLa+hn+rrrk+q+ HL.SW.v1.0.G007114.1 4 QFHILSEFDNGKRSCRKRLADHNRRRRKTQQ 34 7***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	13.802	1	32	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-8	4	31	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	6.3E-4	4	19	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.41E-11	4	35	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MSPQFHILSE FDNGKRSCRK RLADHNRRRR KTQQPINQEN SNKSLQPEIN TRHPSSDNVS 60 RSPPDSGAQS TSSVTVALSP PRISLDCFRQ RSYQTTTASS GSSSSLFFSS G*

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008232622.2	3e-41	PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	2e-15	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A2P5C9P4	7e-45	A0A2P5C9P4_TREOI; SBP-box transcription factor
STRING	XP_008232622.1	4e-37	(Prunus mume)
STRING	EMJ19534	9e-37	(Prunus persica)
STRING	XP_010089258.1	2e-36	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6801	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-17	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]