PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006912.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 561aa    MW: 62567 Da    PI: 4.6342
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006912.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS247.74.5e-76994033304
                  GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL ecA+a+ ++d +++++lL+ l+elasp+gd  q+l +yf++AL  + ++s+ ++yk+l++ ++++++ + +      f+evsP+ 
  HL.SW.v1.0.G006912.1  99 RLLKECAKAIFDKDSTKIHNLLWMLNELASPYGDCDQKLGSYFLQALFCKATDSGLRCYKTLTTVADKTRSFDCARRLILKFQEVSPWT 187
                           6899**********************************************************9999986554444444444******** PP

                  GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelg 173
                           +f+h++ N aIlea++ge ++HiiD++ + ++QWp+Ll+aLa+R++++p+l++T+v+ +++           +++e+ +r++kfA+ +g
  HL.SW.v1.0.G006912.1 188 TFGHVASNGAILEALDGEAKLHIIDISNTLCTQWPTLLEALATRNDETPKLKLTVVVTAAAAvatggggGLPMMKEISQRMEKFARLMG 276
                           *********************************************************988878999999999***************** PP

                  GRAS 174 vpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerfle 259
                           vpfe nv+   +rl +l+ e L ++ +Ea+aVn+v  l r       +e+ r++ +++++sl+P++v+vve+ead   ++++F+  f e
  HL.SW.v1.0.G006912.1 277 VPFELNVVsELSRLGELTREGLGIQDDEAVAVNCVGTLRRAE-----VED-REAAMRAFRSLKPRIVTVVEEEADFtaTRNDFVGCFEE 359
                           *******85556************************999997.....555.789*******************998667789******* PP

                  GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                           +l++y+  f++le++++++s+e+ ++Ere  +r iv v+ac  ++
  HL.SW.v1.0.G006912.1 360 CLRFYTLYFEMLEESFAATSNEKLMLERE-CSRGIVRVLACDDDQ 403
                           *****************************.89*********9876 PP
2GRAS306.7e-10460559304374
                  GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee............................sgslvlgWk 363
                           +  er+e+ ++W++rl++  F+pv +s+++ +++k+ll++++ ++g   + +                            s  ++l+Wk
  HL.SW.v1.0.G006912.1 460 DCSERREKGKQWSDRLKRGSFSPVGYSDDVLDDVKALLKRYPsGWGLVHQPQaigggdqrqqeqperqllvyddsssttaSPGIYLTWK 548
                           5689**************************************88887666334566666677789999999999999999999****** PP

                  GRAS 364 drpLvsvSaWr 374
                           ++p+v++SaW+
  HL.SW.v1.0.G006912.1 549 EEPVVWASAWK 559
                           **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.57871510IPR005202Transcription factor GRAS
PfamPF035141.5E-7399403IPR005202Transcription factor GRAS
PfamPF035142.3E-7460559IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MDITLFTDIS AKQQTHEYYF NSNTYTSNKH HDQLIIISTN NDETVLLDNI MQTTTTTSNH  60
LPPLPPPPPS ASTSLSPDSA FGAAAELWPS AAAGKWAPRL LKECAKAIFD KDSTKIHNLL  120
WMLNELASPY GDCDQKLGSY FLQALFCKAT DSGLRCYKTL TTVADKTRSF DCARRLILKF  180
QEVSPWTTFG HVASNGAILE ALDGEAKLHI IDISNTLCTQ WPTLLEALAT RNDETPKLKL  240
TVVVTAAAAV ATGGGGGLPM MKEISQRMEK FARLMGVPFE LNVVSELSRL GELTREGLGI  300
QDDEAVAVNC VGTLRRAEVE DREAAMRAFR SLKPRIVTVV EEEADFTATR NDFVGCFEEC  360
LRFYTLYFEM LEESFAATSN EKLMLERECS RGIVRVLACD DDQDQDQLLD HHDQDMDDPD  420
PEEEDDQNKN NSNNSNDSNN NSIKNDRRRS ATTATTTTWD CSERREKGKQ WSDRLKRGSF  480
SPVGYSDDVL DDVKALLKRY PSGWGLVHQP QAIGGGDQRQ QEQPERQLLV YDDSSSTTAS  540
PGIYLTWKEE PVVWASAWKL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-1279155981473Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026620.10.0protein SHORT-ROOT
TrEMBLA0A2P5CRB00.0A0A2P5CRB0_PARAD; GRAS transcription factor
TrEMBLA0A2P5G0K30.0A0A2P5G0K3_TREOI; GRAS transcription factor
STRINGEOY048020.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129734106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-110GRAS family protein