PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006560.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 375aa    MW: 41700.6 Da    PI: 6.0068
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006560.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.28.2e-192442871559
                           -TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  15 vkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           vkgse+prsYY+Ct+++Cpvkk vers+  ++++ei+Y+++Hnh 
  HL.SW.v1.0.G006560.1 244 VKGSEYPRSYYKCTHPTCPVKKIVERSH-YGQITEIIYKSNHNHV 287
                           9***************************.9**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.88E-13239289IPR003657WRKY domain
PROSITE profilePS5081114.125239289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-14244289IPR003657WRKY domain
PfamPF031067.9E-13244286IPR003657WRKY domain
SMARTSM007749.3E-12244288IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MIYPPKIYTQ IMIGFYFIVI LIIFMMRVPT KDMLPSCTDD DRKILILDSN GMIRLMKAGV  60
KGSGTTTTAE WMQTMQLKDT NPLPLQGPPA AATGSLTPLF NSHSQSIPFH SQNKFNYNST  120
SSTYNSTTFS GSQNYTQQNN VEEDQAVFME QHSNGFGLQV EFPEEATTKD YEDSSNGVKV  180
SNNMMMRTTM IDDDAKCLNM KMSPPDVTSD QTPDLSRKPI HGEYNTSIDT SERNQFDYYP  240
SVGVKGSEYP RSYYKCTHPT CPVKKIVERS HYGQITEIIY KSNHNHVKPQ SNRRAGLGSS  300
AFSLGEVPEV SGGNGIFVKI EGGSAWKRTP NELFDPLSSV HGKSIELRET ASEVSTTVSS  360
HGDADDEEPE AKRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875770.19e-57WRKY transcription factor SUSIBA2-like
TrEMBLA0A2P5C2804e-73A0A2P5C280_TREOI; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1928145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.12e-22WRKY family protein