PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G006533.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GRAS

Protein Properties

Length: 286aa MW: 33395.6 Da PI: 8.768

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G006533.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	290.5	4.6e-89	2	282	94	373
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 + l aN+ I++ +e+++++Hi+Df+i +G+QWp +++ L++ p+gpp+lRiTg++ p+ g ke++eetg+rLa+++e++gv f++n+ HL.SW.v1.0.G006533.1 2 AMLFANKSIMQVAEKATTLHIVDFGILYGFQWPIFIERLSKMPGGPPNLRITGIEFPQDGfrPKERVEETGRRLAEYCERFGVAFRYNA 90 5689****************************************************99************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 +++k++e++++ee++++++E++aVn++++l+++ +esv+ r++vL+l+++++P ++v + + ++n++ F++rf eal +ysalfd HL.SW.v1.0.G006533.1 91 IATKNWESIRVEEIEIESNEVVAVNCMMRLKHIIEESVENCP-RNAVLSLIRKMNPAIFVNSIVNGSYNAPFFVTRFREALFHYSALFD 178 ******************************88888777.****************************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +l+a+++re++ r+ +Ere++greivnv+aceg++r+er et+++W+ r ++ GF++ pl+ +++++ k lr+ + + + ++++s+++ HL.SW.v1.0.G006533.1 179 MLDATVGRENQVRVLYEREIFGREIVNVIACEGEKRVERPETYKQWHVRCSRTGFRSRPLDREIMSKFKEKLRTWYHKDFVIDQDSNWM 267 ************************************************************************888****** PP GRAS 359 vlgWkdrpLvsvSaW 373 ++gWk+r ++ S+W HL.SW.v1.0.G006533.1 268 LQGWKGRIAYASSCW 282 ************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.919	1	263	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-86	2	282	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MAMLFANKSI MQVAEKATTL HIVDFGILYG FQWPIFIERL SKMPGGPPNL RITGIEFPQD 60 GFRPKERVEE TGRRLAEYCE RFGVAFRYNA IATKNWESIR VEEIEIESNE VVAVNCMMRL 120 KHIIEESVEN CPRNAVLSLI RKMNPAIFVN SIVNGSYNAP FFVTRFREAL FHYSALFDML 180 DATVGRENQV RVLYEREIFG REIVNVIACE GEKRVERPET YKQWHVRCSR TGFRSRPLDR 240 EIMSKFKEKL RTWYHKDFVI DQDSNWMLQG WKGRIAYASS CWLPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-36	2	282	93	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106506.2	1e-158	scarecrow-like protein 14
Swissprot	Q3EDH0	1e-131	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A2P5D669	1e-162	A0A2P5D669_TREOI; GRAS transcription factor
STRING	XP_010106506.1	1e-158	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	1e-124	GRAS family protein