PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G006356.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

G2-like

Protein Properties

Length: 276aa MW: 31152.1 Da PI: 7.2154

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G006356.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.8	5.1e-33	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG+ekAtPk++l+lm++kgLtl+h+kSHLQkYRl HL.SW.v1.0.G006356.1 18 KPRLRWTADLHDRFVDAVNKLGGPEKATPKAVLRLMGLKGLTLYHLKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-31	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.402	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	2.87E-16	18	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-22	119	165	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MERSFVYENG IVMTRDPKPR LRWTADLHDR FVDAVNKLGG PEKATPKAVL RLMGLKGLTL 60 YHLKSHLQKY RLGQQARRQN SVVHSKESNG CSYVQFGSHS SVTTSTTSSR GDKEQCEIPT 120 TEALRHQSEV QKRLEEQLEV QKKLQMRIEA QGKYLQAILE KAQKSLSLDM NGPGNIEVAK 180 AQLTDYNLAL SNFMESMSEV EQKASILDQM GGVYGKENES SFKIYEEGNK EDFEDSKLKD 240 TNTNTIHFDL NTKSGYDFVG ANGLEFEPKM LFDGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010110423.2	1e-146	myb family transcription factor PHL11
Swissprot	C0SVS4	3e-85	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2P5FA92	1e-158	A0A2P5FA92_TREOI; Octamer-binding transcription factor
STRING	XP_010110423.1	1e-145	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-83	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]