PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G006069.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HSF
Protein Properties Length: 267aa    MW: 29755.4 Da    PI: 7.943
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G006069.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34291202102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+y ++e+++++e+isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++F+kg+
  HL.SW.v1.0.G006069.1  29 FLLKTYMLVENPATDEVISWNAQGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNR---------WEFCNDKFRKGE 108
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k++l++i+r+k 
  HL.SW.v1.0.G006069.1 109 KDQLCEIRRRKA 120
                           *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-3621113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.17E-3224118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-4925118IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEGVVVSSSD DQKGVLEYMR KSSSSPPPFL LKTYMLVENP ATDEVISWNA QGTAFVVWQP  60
AEFARDLLPT LFKHSNFSSF VRQLNTYGFR KVATNRWEFC NDKFRKGEKD QLCEIRRRKA  120
WANNNSNNKH QSLAAAAAEE EGAAAAAAVG VGGGGQVVES DEDQRSSSTS SSSEFNTLVD  180
ENKRLKMENG VLSSELKSMK SKCRELLDLV AKYSRSEKEE KVDDHNDQRP KLFGVRLEVE  240
GEMEKKRKRA QVLSESASIL LSQACK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B1e-20291184104Putative transcription factor
5d5x_B1e-20291184104Putative transcription factor
5d5x_E1e-20291184104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024189461.11e-123heat stress transcription factor B-3
SwissprotO222307e-72HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2P5EMY31e-135A0A2P5EMY3_TREOI; Heat shock transcription factor
STRINGXP_008387308.11e-118(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.15e-61heat shock transcription factor B3