PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G004549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 28461.9 Da PI: 5.9365 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155 | 3.4e-48 | 7 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrF Pt+eelv++yL++k+e+k+ e+++vik +diy++ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWka HL.SW.v1.0.G004549.1 7 LPPGFRFYPTEEELVSFYLRNKLESKREEINRVIKVIDIYSIEPWDLPKysgeLCQGDTEQWFFFTPRQEREARGGRPNRTTASGYWKA 95 79****************************999***************656654455777***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s++++++g+kk +vfykg+ap+g+kt+W m+eyr+ HL.SW.v1.0.G004549.1 96 TGSPSYVYSSDNRVIGVKKAMVFYKGKAPTGRKTKWKMNEYRA 138 *****************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-51 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.195 | 7 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-25 | 8 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MTPMQELPPG FRFYPTEEEL VSFYLRNKLE SKREEINRVI KVIDIYSIEP WDLPKYSGEL 60 CQGDTEQWFF FTPRQEREAR GGRPNRTTAS GYWKATGSPS YVYSSDNRVI GVKKAMVFYK 120 GKAPTGRKTK WKMNEYRAIE EVNNLNNVAT PMLRHEFSLC RVYIISGSFR AFDRRPVELT 180 RDIQEQQGDQ AGTSNQNAEM VERTPSSPET SCSGDLADNP MAGGSTDWEM NQHPLWEWEQ 240 FNWPK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-37 | 7 | 163 | 15 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015872891.1 | 1e-136 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 1e-89 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A2P5CWM2 | 1e-148 | A0A2P5CWM2_PARAD; NAC domain containing protein | ||||
STRING | XP_010102010.1 | 1e-128 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 5e-92 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|